Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo16g00022 ATGTCTCACTTACAGTTACACCTACACTCACAACCACCATCACTCTCATCAACATCTTCTTCTTCTTCTTTTTCATCTCTCAAACTTTTCACAAACAACAACTCTTTCTCTTCCAAAAACTCTCTTCCTTTCAAATTCAAACCCTTCACTATCAGATGCCGCCACTCTGACGTCTTCAACCCTTCCCCTCCAAACCCCCCTCCTCCTCCCACTACACCCCCCAACATCCCTTCAGTTGGAGCTTTGCCACCTAGGGTTTTTGTTGGTCATTCCATTTACAAAGGGAAGGCTGCTCTCACTATCACTCCTAGACCACCGGAATTCGTGCCTTTGGATTCAGGGGCATACAAGGTATCTAGGGATGGTTGTTTGCTGCTTCAGTTTGCACCTTCTGCTGGTCCGCGTCAATATGATTGGAATAAGAAACAGCTGTTCATGTTATCTGTGAATGAAATGGGAAGTGTGATTAGCCTTGGTGCAAGGGAGTCTTGTGAATTTTTTCATGATCCTTTCAAAGGCGGAAGTGATGAAGGCAAAATCAGAAAGGTTTTGAAGATTGAGCCTTTTCCGGATGGTTCTGGTTTCTTCTTTAACCTCAGTGTTCAAGACAAAATTGCGAACGTGGATGTAAGCATCAATATCCCTGTATCTAAAGCAGAGTTATCAGTTCTACGCTCAGTTTTCAAGTATATCATGCCATACCTTCTAGGTTGGCACACGTTTGCAAACTCCATAAATCCGGAGTATTCCGCAGCAGCGAACAATGTGGCCAACAATGCTAATTCAAGATATGGTGGAGACTACGAATGGAACAGATAG 819 0.4371 MSHLQLHLHSQPPSLSSTSSSSSFSSLKLFTNNNSFSSKNSLPFKFKPFTIRCRHSDVFNPSPPNPPPPPTTPPNIPSVGALPPRVFVGHSIYKGKAALTITPRPPEFVPLDSGAYKVSRDGCLLLQFAPSAGPRQYDWNKKQLFMLSVNEMGSVISLGARESCEFFHDPFKGGSDEGKIRKVLKIEPFPDGSGFFFNLSVQDKIANVDVSINIPVSKAELSVLRSVFKYIMPYLLGWHTFANSINPEYSAAANNVANNANSRYGGDYEWNR 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo16g00022 272 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 45 272 IPR013742 GO:0003697|GO:0006355|GO:0006952
Mepo16g00022 272 Gene3D Transcriptional Coactivator Pc4; Chain A 79 256 IPR009044 GO:0003677|GO:0006355
Mepo16g00022 272 MobiDBLite consensus disorder prediction 1 20 - -
Mepo16g00022 272 SUPERFAMILY ssDNA-binding transcriptional regulator domain 84 272 IPR009044 GO:0003677|GO:0006355
Mepo16g00022 272 Pfam Whirly transcription factor 92 227 IPR013742 GO:0003697|GO:0006355|GO:0006952
Mepo16g00022 272 MobiDBLite consensus disorder prediction 57 79 - -
Mepo16g00022 272 MobiDBLite consensus disorder prediction 60 79 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo16g00022 47 272 Whirly Transcription Factor Family AT1G14410 61.947 7.15e-102 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Mepo16g00022 Whirly 8.7e-59 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo16g00022 K26559 - gmx:100789252 333.954