Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo16g00012 ATGGCAAAGCTTCACCCCTACGGCAGCCTCCTCCACTCCGTATTCGACGTTATCATGTCCGGCGCCAAGAAAAACCAACCTCCTCTCAAGAAAACCAAAACTCATCACTTTCACTCCACTCCCTCTAAAAGCATCCGTACATTCTTTCAACCCCTCAACAATCCTATTTCTCCCAAAAACCCTAATACTGAATCTCCTAACAAGCTTCCTCGCCAAACATCAACTTCTTGGACTTCTTCTCAATCTTCTTCGTCCTCTTCCACCAATGTTGCTGAAGTGAAAAAACGGATTTCACTTTTGAAGAAGACACCGTCAGAGTTTGATCCTAGTTCAGTTGCATGGTGGAAGAAGGGTGAACCAGTGCCGTTTCTGTTTCTCTCCTTGGCGTTCGACATGATCAAGGAAGAGAAAGGGAGGAAGCGATCTCTTTATGCATTTCTGGCTTTTGTTGTGATACGGCTGCTGTTATGCTGTGCTGTGGCTGGACTGTCTTGTTTTTGGCCAGCTTTGAAATTAGGTGACTTGGGGTTAGTTGCTCAAGCTAGCCGTTTTTCTCAGACGCTACAGAAGTCTGATGCATTGACTATTACCAAGGTTTTCAATACCTTTCACCTTATTGCCAAGGAATCTGGAAAGGACAGTCAAAAGAAGAAAAATAATCATATAAAGTCGCTTCTTCATGCTTCGACTGACTGTGAACCTTTATATCTAGTCCGTTTACTACTGAAAGAGTTGCGAATTGGATATGCCGAGCAGACTCTCTTGTCTGCATTGGGCCAAGCTGCAGTGTACACTGAAGAACATTCTAAACCACCTCCTGGAATTCAGTCTCCTTTAGAAGAGGCTACGAAGATTGTCAAACAGGCCTATTCTGTTCTCCCTGATTATGACAGAATAATATCTGCAATGCTTACTGATGGTGTATGGCTACTTCCAAAGACTTGTAACTTTACTCCTGGTATTCCGGTTGAGCCTATGCTGTCAGAAAAAATCACAGGTGTATCTGAAGCTCTGAGTAAGTTACGGAATGCAGAGTTGATTTGTGAATACAAATACGATGGAGAATGTGCTCAGATACATTACAGGGAGAATGGCTTGGTAGAGATTTACAGTAGAAACTCAGAACGTAACACTGGGAAGTTTCCTGATGTTGTCGCTGCAGTTTCAAGGTTAAAGAAAAAAAATGCATCGTCGTTTGTTCTAGATTGTGAAATTGTTGCATATGATCGTAAAAAACAGAGAATCCTTCCTATGCAGGTGCTTAGTACTCGGGCAAGAAAAGATGTAGCTGTGAGTAACATAAAGGTTGATGTCTGCGTATTTCCTTTTGATTTGTTGCATCTTAACGGCCAAGCACTTTTACAAAAGAACCTGAATATCCGTAAAGAGCATCTCTATGCCTCATTTGAGGAGGAATCAGGATTTCTTCAGTTTTCAACGTCATTAAAATCAAATGATGCTAAGGAAATACAAAAGTTTCTTGACAAATCTGTTGATGCAAGCTGTGAGGGACTAATTCTTAAAACATTAGACAAAGATTCTACATATCAACCTTCCCAACGGAACTGGCTGAAACTGAAGAAAGATTATATGAAAACTATAGGGGACACACTAGATTTGGTACCGATTGGCGCTTTCCATGGTCAAGGAAAACGAGCAGGAACTGGATTCAAAGATGAAGATCTTGAAGAAAGTTCTGCTAGGCTCCGCTCTAATCTCATTCCGAAACCAAAGGCATACTATAAACATGCAGAAAAAGATAAACCTGATGTCTGGTTTGAAGCCAGTGAGGTGTGGGAGGTGAAAGTTTCAGACCTGACCATTAGCCCTGATTACCAAGCTGCAGTGGGAAAAGTACATTCGAATAAGGGCATATCTCTTCGAATGCCACGTCTTGTTCGATTTCGTCCTGACAAAGCTCCTGATCAGGCCACATCATCTGAACGGATAGCTCTATCAATATCTAATTATCTAATTATACTGCTCCATGGACCTAACTCTGAAGATAAGATTGAACTTTAG 2022 0.4159 MAKLHPYGSLLHSVFDVIMSGAKKNQPPLKKTKTHHFHSTPSKSIRTFFQPLNNPISPKNPNTESPNKLPRQTSTSWTSSQSSSSSSTNVAEVKKRISLLKKTPSEFDPSSVAWWKKGEPVPFLFLSLAFDMIKEEKGRKRSLYAFLAFVVIRLLLCCAVAGLSCFWPALKLGDLGLVAQASRFSQTLQKSDALTITKVFNTFHLIAKESGKDSQKKKNNHIKSLLHASTDCEPLYLVRLLLKELRIGYAEQTLLSALGQAAVYTEEHSKPPPGIQSPLEEATKIVKQAYSVLPDYDRIISAMLTDGVWLLPKTCNFTPGIPVEPMLSEKITGVSEALSKLRNAELICEYKYDGECAQIHYRENGLVEIYSRNSERNTGKFPDVVAAVSRLKKKNASSFVLDCEIVAYDRKKQRILPMQVLSTRARKDVAVSNIKVDVCVFPFDLLHLNGQALLQKNLNIRKEHLYASFEEESGFLQFSTSLKSNDAKEIQKFLDKSVDASCEGLILKTLDKDSTYQPSQRNWLKLKKDYMKTIGDTLDLVPIGAFHGQGKRAGTGFKDEDLEESSARLRSNLIPKPKAYYKHAEKDKPDVWFEASEVWEVKVSDLTISPDYQAAVGKVHSNKGISLRMPRLVRFRPDKAPDQATSSERIALSISNYLIILLHGPNSEDKIEL 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo16g00012 673 FunFam DNA ligase 354 479 - -
Mepo16g00012 673 SUPERFAMILY Nucleic acid-binding proteins 535 650 IPR012340 -
Mepo16g00012 673 Pfam ATP dependent DNA ligase domain 325 527 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mepo16g00012 673 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 104 315 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mepo16g00012 673 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 317 533 - -
Mepo16g00012 673 Pfam DNA ligase N terminus 171 258 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mepo16g00012 673 CDD Adenylation_DNA_ligase_I_Euk 314 530 - -
Mepo16g00012 673 ProSitePatterns ATP-dependent DNA ligase signature 2. 503 527 IPR016059 GO:0003909
Mepo16g00012 673 ProSiteProfiles ATP-dependent DNA ligase family profile. 431 554 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mepo16g00012 673 Pfam ATP dependent DNA ligase C terminal region 552 639 IPR012309 GO:0003910|GO:0006281|GO:0006310
Mepo16g00012 673 Gene3D DNA ligase/mRNA capping enzyme 354 479 - -
Mepo16g00012 673 Gene3D - 552 656 IPR012340 -
Mepo16g00012 673 Gene3D - 335 532 - -
Mepo16g00012 673 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 171 554 - -
Mepo16g00012 673 NCBIfam ATP-dependent DNA ligase 171 554 IPR000977 GO:0003910|GO:0005524|GO:0071897
Mepo16g00012 673 Gene3D - 167 327 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mepo16g00012 673 MobiDBLite consensus disorder prediction 48 89 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo16g00012 13 651 Core DNA Replication Machinery Family AT1G08130 50.342 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo16g00012 K10747 - pop:7463320 726.087