Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo12g00040 ATGAGTAATACAGAATTCAAGAGAGTGGAGGAGATAAGTGAGGAGACAAAAAATGAATGGACTGAGGAGGAAACACTGAATCTTCTTGAAGCTATTACAAATTTCGGGGATGATTGGAAGAGGGTTGCTCATCAAGTTGTTCGTAGGACCGACAAGGAATGTGTTGCTTGTTTTCTAGAGCTTCCTTTTGGCGATCAGTTGAAGCATCCCATTGATGCTGAATGTGAAGCTGAAACTGTTGCGTCGGGTAAATCTAGTAAGAGAATGTGTCTCACACCTCTTACGGATGCTAGCAATCCTATCATGGCTCAGGCTGCTTTCCTTTCTGCTTTGGCAGGGACGGAGGTTGCACAAGCTGCAGCTCAAGCTGCTCTGACAAGTTTGTCCAATGTTTACAAATCAACTAGAATTAATTACCGGTCATTTCCAAGGAATACATTGCAGCAAGATGCTTCTGTTGCATCCGATGGTGGTAATGCTTCAGATTCTATCCAAGGATCTCTATTGCGCGCAAATTTACAGCTTGAGAAGGAAGAATCAGACGTGGAAAAAGCTATTTCTGAGGTTATAGAAGTTCAGATGAAAAATATCCAGGACAAGCTTATCAATTTTGAGGATTTAGACATGTTGATGGAAAAAGAACGCCAGCAGTTGGAGCAAACGAAGAGTTTGTTTTTCCTTGATCAGCTCAATCTTTTATTTCGTAAAACATCTGCGTCTACGACTGGAGAAGACAATCATGTAAAAAGTAATTGA 756 0.4114 MSNTEFKRVEEISEETKNEWTEEETLNLLEAITNFGDDWKRVAHQVVRRTDKECVACFLELPFGDQLKHPIDAECEAETVASGKSSKRMCLTPLTDASNPIMAQAAFLSALAGTEVAQAAAQAALTSLSNVYKSTRINYRSFPRNTLQQDASVASDGGNASDSIQGSLLRANLQLEKEESDVEKAISEVIEVQMKNIQDKLINFEDLDMLMEKERQQLEQTKSLFFLDQLNLLFRKTSASTTGEDNHVKSN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo12g00040 251 Pfam SWIRM-associated region 1 170 233 IPR032451 -
Mepo12g00040 251 SMART sant 16 64 IPR001005 -
Mepo12g00040 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 54 IPR017930 -
Mepo12g00040 251 PANTHER SWI/SNF COMPLEX-RELATED 17 229 - -
Mepo12g00040 251 Gene3D - 15 65 - -
Mepo12g00040 251 FunFam SWI/SNF complex subunit SMARCC2 isoform C 15 66 - -
Mepo12g00040 251 CDD SANT 19 61 IPR001005 -
Mepo12g00040 251 Coils Coil 168 195 - -
Mepo12g00040 251 Pfam Myb-like DNA-binding domain 17 55 IPR001005 -
Mepo12g00040 251 SUPERFAMILY Homeodomain-like 16 73 IPR009057 -
Mepo12g00040 251 ProSiteProfiles SANT domain profile. 15 66 IPR017884 -
Mepo12g00040 251 ProSiteProfiles Myb-like domain profile. 12 54 IPR001005 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mepo12g00040 SWIRM-assoc_1 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo12g00040 K11649 - gmx:100779777 295.819