Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo12g00038 ATGGCTTCCGATCTTGAAGTGAAAGCCAAAGAAGCCTTTGTTGAAGACCACTTTGAGTTGGCTGTTGAACTTCTCTCTCAAGCCATTACTCTTGACCCTCTTAAACCTGAATTCTACGCTGATCGTGCTCAAGCCCATATCAAACTCAACCACTTCACTGATGCTGTTGCTGATGCAAACAAAGCAATTGAGTTGAATCCTTCTCTATCAAAGGCATATTTGCGCAAAGGTAATGCATGCATCAGGCTTGAGGAATATCAGACTGCTAAGACTGCTTTAGAGACGGGTGCCTCATTGGCTGCAGACAAATCAAGATTTGTTAAGTTGATCGAAGAATGTGACAAACTCATTGCAGAAGAATCTGATACCGTACCTACACAGGAAAAGTCCACAACACAGGATCCAACTCCAAAAGATGTTCAGCCAGAAGATCTTTCAGAGGAGCCGATAGTGGTGGTTGCTAAGCCTAGATATAGGCATGAATTTTACCAGAAACCTGAAGAAGTGGTTGTAACCATATTTGCAAAGGGGGTCTCAAAGGAAAGCATTACTGTTGACTTTGGTGAACAAATTCTAAGTGTCAACATTGATGTCCCTGGAGAAGATGCATATGTTTTTCAAAATCGCTTGTTTGGAAAGATCATACCTTCCAGATGCCGGTATGAAGTCTTGTCCACCAAAATTGAAATTCGTCTTGCTAAAGCTGAACCTATTCAATGGAAGTCCCTAGAATTCAACAAAGAGACCACAATTGCACCTAAGGCTATTGCTTCAGTTACTGCCACTCAAAGACCTACTTACCCGTCCTCAAAACCAAAAAGAACAGATTGGGATAAACTTGAAGCTCAAGTTAAGAAAGAGGAGAAAGATGAAAACCTTGATGGCGATGCTGCCCTGAACAAATTTTTCCGTGAAATTTATCAAGATGCTGATGAGGATACAAGAAGAGCCATGAAAAAGTCATTTGTGGAGTCGAATGGAACAGTGCTGTCTACAAACTGGAAGGAAGTGGGAACAAAGAAGGTGGAAGGAAGTCCTCCAGATGGCATGGAGTTGAAGAAATGGGAATATTAA 1074 0.4162 MASDLEVKAKEAFVEDHFELAVELLSQAITLDPLKPEFYADRAQAHIKLNHFTDAVADANKAIELNPSLSKAYLRKGNACIRLEEYQTAKTALETGASLAADKSRFVKLIEECDKLIAEESDTVPTQEKSTTQDPTPKDVQPEDLSEEPIVVVAKPRYRHEFYQKPEEVVVTIFAKGVSKESITVDFGEQILSVNIDVPGEDAYVFQNRLFGKIIPSRCRYEVLSTKIEIRLAKAEPIQWKSLEFNKETTIAPKAIASVTATQRPTYPSSKPKRTDWDKLEAQVKKEEKDENLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVEGSPPDGMELKKWEY 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo12g00038 357 ProSiteProfiles SGS domain profile. 266 357 IPR007699 -
Mepo12g00038 357 ProSiteProfiles CS domain profile. 155 244 IPR007052 -
Mepo12g00038 357 Pfam CS domain 159 234 IPR007052 -
Mepo12g00038 357 Pfam SGS domain 276 355 IPR007699 -
Mepo12g00038 357 PANTHER PROTEIN SGT1 HOMOLOG 1 355 IPR044563 GO:0051087
Mepo12g00038 357 Gene3D - 156 247 IPR008978 -
Mepo12g00038 357 Gene3D Tetratricopeptide repeat domain 1 133 IPR011990 GO:0005515
Mepo12g00038 357 SMART tpr_5 70 103 IPR019734 GO:0005515
Mepo12g00038 357 SMART tpr_5 2 35 IPR019734 GO:0005515
Mepo12g00038 357 SMART tpr_5 36 69 IPR019734 GO:0005515
Mepo12g00038 357 SUPERFAMILY TPR-like 6 113 IPR011990 GO:0005515
Mepo12g00038 357 FunFam Protein SGT1 homolog A 153 258 - -
Mepo12g00038 357 Pfam Tetratricopeptide repeat 71 102 IPR019734 GO:0005515
Mepo12g00038 357 Pfam Tetratricopeptide repeat 37 68 IPR019734 GO:0005515
Mepo12g00038 357 CDD p23_CS_SGT1_like 161 244 - -
Mepo12g00038 357 MobiDBLite consensus disorder prediction 120 146 - -
Mepo12g00038 357 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Mepo12g00038 357 SUPERFAMILY HSP20-like chaperones 153 250 IPR008978 -
Mepo12g00038 357 MobiDBLite consensus disorder prediction 123 139 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo12g00038 1 112 U-box Gene Family AT3G07370 26.786 1.73e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo12g00038 K12795 - gmx:100194421 553.132