Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo11g00007 ATGGCCTTAGATCAGTACATGGACGATACCGTCTCTCAAATTGATACCTTGGAAGAGAAGGCATCTTTGAAAAACTGGAAAACCTCCACCGATGTGATTGCAGATTCTGATAGAAATGCATCTAGTGGCTTTGACTGTAACATCTGCCTGGATTGTGTGCAAGACCCGGTAGTCACTCTGTGTGGTCATCTTTACTGCTGGCCTTGCATTTACAAATGGCTTGACATACAAAGCGGCATCTCTTCCGAAAACGAGAAGCAGAAGCCACAATGTCCGGTATGCAAATCAGAACTCTCTCAATCCTCGCTAGTTCCATTATATGGCCGTGGCCAAACCATGACCGTGTCTGAAGGCAAGGCTCAGCAAGTAGGGATTGTCGTGCCTCGAAGACCTACGGGTCCAAGATCATTTAATGCTACAACTGTTTCACAACCTACTTATCAAAGTTATCAACATCCTCGGCAATTCAACTCAATTCCGAGCAGTTACCCTTCACCGATGTTTAGTACAAGTGGTTCGGCACTAGATAACACATACGGAATCTTTGGTGAAATGATATATGGAAGGATGTTTGGTAACCAGATAGAAAACATGTATACATATCCTAATTCTTATAGTTTTCAAGGGACCAATAATCCAAGGATGAGAAGACATTTAATGCAAGTTGATAAATCACTCAACAGAATCAGTTTTTTCCTCCTTTGCAGCTTAGTTTTGTGTGTTCTCTTATTCTGA 735 0.4204 MALDQYMDDTVSQIDTLEEKASLKNWKTSTDVIADSDRNASSGFDCNICLDCVQDPVVTLCGHLYCWPCIYKWLDIQSGISSENEKQKPQCPVCKSELSQSSLVPLYGRGQTMTVSEGKAQQVGIVVPRRPTGPRSFNATTVSQPTYQSYQHPRQFNSIPSSYPSPMFSTSGSALDNTYGIFGEMIYGRMFGNQIENMYTYPNSYSFQGTNNPRMRRHLMQVDKSLNRISFFLLCSLVLCVLLF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo11g00007 244 SMART ring_2 46 94 IPR001841 -
Mepo11g00007 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 16 240 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mepo11g00007 244 SUPERFAMILY RING/U-box 42 107 - -
Mepo11g00007 244 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 29 108 - -
Mepo11g00007 244 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Mepo11g00007 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 113 IPR013083 -
Mepo11g00007 244 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
Mepo11g00007 244 Pfam RING-type zinc-finger 46 92 IPR027370 -
Mepo11g00007 244 CDD RING-HC_AtRMA-like 44 96 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo11g00007 39 244 C3H Transcription Factor Family AT4G28270 40.284 3.79e-46 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo11g00007 K10666 - gmx:100785491 333.183