Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g4006 ATGGAAAGTTCTGAGAAATTTTCTCAAAGAAGTAACAATGGCTTGAACCTCAAGGCTACAGAGTTAAGACTTGGTTTACCTGGTTCTGAATCACCAGATAATGATATTGTTGAAGAAAAAAATGCATACCCTTTATGCATGCTTAAGAGTTTAGTGTCAGGTGCAAAAAGAGGTTTTTCAGATGCAATTGATGTTGGTAGTTCTGGAAAATGGATTCTCTCTGGAAATGGTGGATCTGAAATTGGTATGTGTAAAGATAGAACCAACCAACAAGGTTCTGTTGTGAAAGATAAAATTCAACAACAATCTCTTAAACCTTTGAATGAGAAGAAGACTCAGATATCAACTTCTGCTGCAAAGGAACAAGTTGTAGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCCACTCAATCTCAAAAGAATGATATTGATGATGCAGAAGCCAAATCTGGATGCCTTTATGTAAAAGTTAGCATGGATGGTGCTCCATACTTAAGGAAACTGGATCTCAAATTTTTTGGCACTTACAAGGAACTATCTTCAGCACTAGAAAAGATGTTTAGTTGTTTTACAATAAGTCAATTTGGCTCTCATGGAGTTTTTGGTCAAGGTAATTTGTGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGATTATGTCCTCACCTATGAAGATAAAGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGAAGATGTTCATCGACTCTTGCAAGAGGTTAAGGATAATGAAAAGTTCTGAAGCAATTGGATTAGCACCAAGAGCCATGGAAAAGTGCAAAAGTCGGAACTAG 828 0.3756 MESSEKFSQRSNNGLNLKATELRLGLPGSESPDNDIVEEKNAYPLCMLKSLVSGAKRGFSDAIDVGSSGKWILSGNGGSEIGMCKDRTNQQGSVVKDKIQQQSLKPLNEKKTQISTSAAKEQVVGWPPIRSFRKNSMATQSQKNDIDDAEAKSGCLYVKVSMDGAPYLRKLDLKFFGTYKELSSALEKMFSCFTISQFGSHGVFGQGNLCESRLMDLLHGSDYVLTYEDKDGDWMLVGDVPWKMFIDSCKRLRIMKSSEAIGLAPRAMEKCKSRN* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g4006 275 MobiDBLite consensus disorder prediction 1 35 - -
Mal8g4006 275 PANTHER AUXIN-RESPONSIVE PROTEIN IAA27 8 268 - -
Mal8g4006 275 SUPERFAMILY CAD & PB1 domains 153 256 - -
Mal8g4006 275 ProSiteProfiles PB1 domain profile. 155 257 IPR000270 GO:0005515
Mal8g4006 275 Pfam AUX/IAA family 20 266 IPR033389 -
Mal8g4006 275 Gene3D - 149 269 - -
Mal8g4006 275 MobiDBLite consensus disorder prediction 1 18 - -
Mal8g4006 275 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 268 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g4006 Mal-Chr8 115535111 115538160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g4006 108 260 B3 DNA Binding Superfamily AT5G20730 28.221 1.54e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mal8g4006 AUX_IAA 8.4e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g4006 K14484 - gmx:100803754 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g4006 8 115535111 115538160 Mal8g4006 8 115535111 115538160 ECH
Mal7g5210 7 121251122 121254051 Mal8g4006 8 115535111 115538160 PCT