Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3980 ATGGCGGAAGGTGAAGGAGGAGATTGTCCTCCAAAGAATGTTCCGGTTGTTACGGCTGCGAATGCGACTACGGCGGCTGCGAATGCGACTGCGACGGCGTGGTTGGATGTACCGGCGAAGAAGCTAGCGAGGCAGCTTGATTTTAATGCGATGATGGAACAGTCGAAACCGCAGGGGAGTGTGCTGCTGCAACAACAACAGGGGAGTGGTGTGATGTTGCAGAAACCGGTTGGCGGTTTGCCGACGCCGGTGCCGGCACCGGTGCAGACACTTCAGCAGACTTCTGTGAGGGTTGGGAAACAAGAATCTCCCAAACCAAGATCAAGACCTAACTTTGAAGTGAAAGAAGGTACTCCAAAGAAGCAAAGGCAGTGCAATTGTAAACACTCTAAATGCTTAAAACTATATTGTGAATGTTTTGCGTCGGGAATATATTGTGACGGTTGCAACTGTGTAAATTGTTTCAACAATGTTGATAATGAAGCTGCTAGACGAGAGGCTGTTGAAGCTACTTTAGAGCGCAATCCAAATGCATTTAGGCCCAAAATTGCGAGCAGCCCTCAGGGAACACGTGATAGCAGGGAGGAGGCTGGGGAAGGTTTAGTATTAATAAAACATCACAAGGGGTGCCATTGTAAAAAATCTGGCTGCCTTAAGAAGTACTGTGAATGCTTCCAAGCCAACGTTCTTTGTTCTGAGAATTGTAGATGCATGGACTGCAAGAACTTTGAGGGAAGTGAAGAGAGACAAGCTTTGTTTCGTGGAGATCAAAATAACAACGCATATCTTCAGCAAGCGGCAAATGCTGCCATAACTGGAGCTATTGGTTCCTACGGCTTTTCATCACCTCCAGCATTAAAGAAAAGAAAAGGTCAGGAACTCTTCTTATGGCCTACAGCCAAGGATCCATCAATTAGCAAGCCAGGACAACAGGTAAACCTTGCCAAAGGTCCAGCACCCTCCTCATCAGTGTCACCTGTCTCAAGTGCTCGTGCTGCAAATTCAACATTAGGTCAGAGTCCATCAAAATTAAAGTACAGGTCTCTTTTATCAGACGTTGTACAACCACACCACCTCAAGGAGCTTTGTTCAGTTTTGGTACTAGTATCTGGACAAGCTGCAAAGACGCTTGCAGACCAGAAAAATTCAGTGAAACAGCGTACAGAAGATCAGACAGAAACTTCCCTTGCTTCTTCAACTCAAGAGCAATTACCAAGTCAAAAAGAAGTTGATGTTGCGAAGGCTATGGATGATGATTGTTCGAGTGCAAACCAAACAGATAAAATCAGCCCAGGTAATTCCTGTTCAGATGGAGCCGATGTCCCGAAAGGGAGGCCAATGTCTCCTGGGACTTTAGCCTTGATGTGTGACGAGCAAGATACAATGTTCATGACAGCCGCCTCTCCAGTCGAGCAAATGACCCATGCTTGCAACACTTCGCAATTTGCTAGTGGACAAGGAGTCACAGAGGTCTATGCTGAGCAAGAAAGAATTGTATTAACTCAATTTAGAGATTTTCTCAATCGGGTTATTACTATGGGAGAAATAAATGAGACAAAGTGTTCTTCATTGGCTAGAAGTGAATTAGAGAATAAAAAGGATCCAATCAACAATGAAACTGGAAATTCCAGTACTGAGATAGTGCATCAGCAGGAAGCCACTAGCAATGGTGATGGCAAAGCTGTAGTTCAACCTATGGCCACAACTTCAACACCTGTGGTCCCTAGTGATGCTGTAGCTGAAAATGGAGAATCCAAGCTGAAGATGGAAAAAGAGACATGA 1782 0.4523 MAEGEGGDCPPKNVPVVTAANATTAAANATATAWLDVPAKKLARQLDFNAMMEQSKPQGSVLLQQQQGSGVMLQKPVGGLPTPVPAPVQTLQQTSVRVGKQESPKPRSRPNFEVKEGTPKKQRQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVDNEAARREAVEATLERNPNAFRPKIASSPQGTRDSREEAGEGLVLIKHHKGCHCKKSGCLKKYCECFQANVLCSENCRCMDCKNFEGSEERQALFRGDQNNNAYLQQAANAAITGAIGSYGFSSPPALKKRKGQELFLWPTAKDPSISKPGQQVNLAKGPAPSSSVSPVSSARAANSTLGQSPSKLKYRSLLSDVVQPHHLKELCSVLVLVSGQAAKTLADQKNSVKQRTEDQTETSLASSTQEQLPSQKEVDVAKAMDDDCSSANQTDKISPGNSCSDGADVPKGRPMSPGTLALMCDEQDTMFMTAASPVEQMTHACNTSQFASGQGVTEVYAEQERIVLTQFRDFLNRVITMGEINETKCSSLARSELENKKDPINNETGNSSTEIVHQQEATSNGDGKAVVQPMATTSTPVVPSDAVAENGESKLKMEKET* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3980 593 MobiDBLite consensus disorder prediction 389 407 - -
Mal8g3980 593 MobiDBLite consensus disorder prediction 95 115 - -
Mal8g3980 593 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 55 565 - -
Mal8g3980 593 SMART CXC_2 120 160 IPR033467 -
Mal8g3980 593 SMART CXC_2 205 246 IPR033467 -
Mal8g3980 593 MobiDBLite consensus disorder prediction 419 433 - -
Mal8g3980 593 MobiDBLite consensus disorder prediction 530 593 - -
Mal8g3980 593 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 208 242 IPR005172 -
Mal8g3980 593 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 123 157 IPR005172 -
Mal8g3980 593 PANTHER TESMIN/TSO1-RELATED 55 565 IPR028307 -
Mal8g3980 593 MobiDBLite consensus disorder prediction 536 576 - -
Mal8g3980 593 MobiDBLite consensus disorder prediction 304 338 - -
Mal8g3980 593 MobiDBLite consensus disorder prediction 300 338 - -
Mal8g3980 593 MobiDBLite consensus disorder prediction 377 446 - -
Mal8g3980 593 ProSiteProfiles CRC domain profile. 121 245 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3980 Mal-Chr8 114998614 115004668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3980 3 573 CPP Transcription Factor Family AT4G29000 50.580 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Mal8g3980 TCR 1.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3980 - - gmx:100818116 798.119