LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal8g3957	ATGGAAAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAATGGAGACCAAGTATTGAATTCTGGAGTTGGTTGCTCTGCCAAACGAATGGAGAGAAAGTATTTGATCGATTTAAATGAGCCGCGTCCTTCTCCTGATTATTCTCAGGTTTTTGCTGATGGTTGCCACATGGCAACGGGAGGATATGCAAAACTCCAAGATGAAGTTCAACAACCAACGTCAGATCTTCCATTCTTAACAGCACCTGAACAACGACATGCTGCAGAAGAAGAACAAGTTCATGTGCAAAATGATGCAAACGAAATTTTGCTAAATGCTGAAATTCTAAGGGCTAGGAAAGGAAAGATGCCAATGAATTATGCTGAAGGAGCACCTCCCCAAGTACCTGTTGCAACCGATGAAGAAAAAATTGTATCATCCGATGAACAACAAGTTCCAAATACAACTGTTGGTGGTGAAGCAAGTTCCATTGGAGGAATGATATTGCTTCAACATGATGATACTAATGCTAGTGGATCTTGTCCACAAAGGAAGAGGAAGAACGACTTCTCTGAATATTTTAAACCCCCTTGCACAAGGATGGGCGATGCGCCAAAAATAGTGACCCGAGTTGAAAGCAGTAAAGACATTGTGGATGATGGTTATCGCTGGCGGAAGTATGGATGCAAGGAAATCAAAGGAAATCATAATTACCCTAGGGGGTACTTTAGGTGCGCAGAAACAAGTTGTAATGTGAAAAAACAGGTCGAAAGGGATTCACAAAATCCGAAATATGTAATCGCTTCATATGAAGGCAAACATAATCACGGATTGCATATCATCACACAAAAAATCCCAACAAACTCAAGTAATACTACTACAACAACACTACATGGGAATGCTAGCATGCCATCACCACCTTTTGCATTTCCTATAACTCACCCTCTCACACCTTCTCACTACTATGGAAGTTATGGATCTTATGGTCTGAATTGCATTTGGCCTAATAATAATCCTTTCCTGAACGTGGTCAGCAATCCCATGATGATGCCTTATGGATTTATTAACGGGCAACAATTTCTAGATTGTTATGTTGCTCCTCCAGTTGCTACCTATCAAGTTGTTCCTGGTATTGCTGGATTTCCAATATCCCCACCACAACCCCAATTTCATGACTTTCTTCAGCTTGGTGGGTACAATATTGCTGCTACTCCAATCGTTCCTTTCAGTGGTACTCCACCAGTTGATCAGGAAGCCAACAACGTTCCTAATGATGAATGA	1284	0.4089	MENNNNNNNNNNNNNNNNNNNNGDQVLNSGVGCSAKRMERKYLIDLNEPRPSPDYSQVFADGCHMATGGYAKLQDEVQQPTSDLPFLTAPEQRHAAEEEQVHVQNDANEILLNAEILRARKGKMPMNYAEGAPPQVPVATDEEKIVSSDEQQVPNTTVGGEASSIGGMILLQHDDTNASGSCPQRKRKNDFSEYFKPPCTRMGDAPKIVTRVESSKDIVDDGYRWRKYGCKEIKGNHNYPRGYFRCAETSCNVKKQVERDSQNPKYVIASYEGKHNHGLHIITQKIPTNSSNTTTTTLHGNASMPSPPFAFPITHPLTPSHYYGSYGSYGLNCIWPNNNPFLNVVSNPMMMPYGFINGQQFLDCYVAPPVATYQVVPGIAGFPISPPQPQFHDFLQLGGYNIAATPIVPFSGTPPVDQEANNVPNDE*	428

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal8g3957	427	ProSiteProfiles	WRKY domain profile.	214	280	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mal8g3957	427	PANTHER	WRKY TRANSCRIPTION FACTOR 50-RELATED	57	280	-	-
	Mal8g3957	427	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	57	280	IPR044810	GO:0003700
	Mal8g3957	427	MobiDBLite	consensus disorder prediction	1	30	-	-
	Mal8g3957	427	SMART	WRKY_cls	219	279	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mal8g3957	427	SUPERFAMILY	WRKY DNA-binding domain	215	278	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mal8g3957	427	Pfam	WRKY DNA -binding domain	220	277	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mal8g3957	427	Gene3D	WRKY domain	204	279	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mal8g3957	427	MobiDBLite	consensus disorder prediction	1	29	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal8g3957	Mal-Chr8	114437025	114440861	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal8g3957	138	295	WRKY Transcription Factor Family	AT2G03340	37.805	2.06e-23	100

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Mal8g3957		WRKY	6.7e-21	CL0274