Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3946 ATGCCGACACGATCAACGGGAACAATAAAACAAGACTGGGAACCTATCGTCCTCCACAAAACCAAACCCAAAGCACAAGACCTTCGTAACCCAAAAGCCATAAACCAAGCCCTACGAACCGGAGCAGAAATCCTAACCGTAAAAAAACCAACCGCCGGTTCAAACAAAAAAGCCACAGCCGGTCCGGTTTTAAACGCGAGGAAACTAGACGAAGCGGCTGAACCGGCAGCGTTGGAGCGGGTTGGTGGGGAAGTGAGACACGCGATTCAGAAAGCGCGTTTGGATAAGAAAATGAGTCAAGCTGAGTTGGCGAAATTGATTAATGAAAGGGTTCAGGTTGTTCAGGAATATGAGAATGGTAAAGCTGTGATTAATCAAGGTGTTTTGGGGAAAATGGAGAAGGTTTTGGGGGTTAAGCTTAGGGGCGAAGAAATGAGAATGTATGGGGAGGGCGATGAGAAGAGGCCTGCTGTACCACTCAACATAGCCCGAGAATTTGCTTAG 504 0.4762 MPTRSTGTIKQDWEPIVLHKTKPKAQDLRNPKAINQALRTGAEILTVKKPTAGSNKKATAGPVLNARKLDEAAEPAALERVGGEVRHAIQKARLDKKMSQAELAKLINERVQVVQEYENGKAVINQGVLGKMEKVLGVKLRGEEMRMYGEGDEKRPAVPLNIAREFA* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3946 167 Coils Coil 89 109 - -
Mal8g3946 167 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1C 1 146 - -
Mal8g3946 167 ProSiteProfiles Cro/C1-type HTH domain profile. 89 145 IPR001387 -
Mal8g3946 167 Pfam Multiprotein bridging factor 1 11 81 IPR013729 -
Mal8g3946 167 Gene3D - 73 157 IPR010982 GO:0003677
Mal8g3946 167 SUPERFAMILY lambda repressor-like DNA-binding domains 86 140 IPR010982 GO:0003677
Mal8g3946 167 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 146 - -
Mal8g3946 167 Pfam Helix-turn-helix 89 140 IPR001387 -
Mal8g3946 167 CDD HTH_XRE 88 140 IPR001387 -
Mal8g3946 167 SMART mbf_short4 88 143 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3946 Mal-Chr8 114133414 114134886 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Mal8g3946 MBF1 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3946 K03627 - cpap:110818571 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g3946 8 114133414 114134886 Mal8g3946 8 114133414 114134886 ECH