Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3879 ATGGTTTACTTTGAGAGTACAACGGGTGATTTCTCATGGGTTTGTCTGAAGGATTTTGATTTCACTTCTTTATGTTCTCTAAGGAGTGCAATAGACACTATCAATATACTTTTTGTCTGTGTCTACTACATGTCCTTGGCTATCAGTTTAAACAGAAAAACTTCTGCAAATAGGAGCTACACAAAAAGTTGGTTTTTCTTTTTCTACTGGCTTCTGAGCTGGTTAGCTTGTATTATCAGAGGAATTGTTTGGATTTCTTTAACAGTTTCTTTGCTTGTTCAGCAACCACTACTAGCTCAGAAATGTGAAACAAAACAAACTGGACTAGGCCATGCTACCTTGCTTAGCAAGTTAGTTTTCTCTTGGGTTAACTCTTTGCTTACAATGCCTATCAAAACTGTGCATGCATGGGAATCTCTTGTAAGGGAGAGGACTAAGAACAATACAACAAACTTGGTTCTTTGGTCTATAGTAAAAACTTACTTGAAAGGAAACATATTAATAGCATTCTATGCACTACTCAGAACTATTTGTGTTGTAGTTTCACCTCTAATACTCTATGCTTTTGTTAACTACTCAAAAGGTTTTTCCATAGTAGGTTTTCTGATTCTCACCAAATTGATTGAGTCTTTGTCCCAGAGACATTGGTTTTTTAACTCAAGGAGGTTAGGAATGAAAATGAGATCAGCTCTGATGGTGGCAGTTTATGAGAAACAGCTAAAGCTTTCTAGCTCAGCAAGGACAAGACACTCGGCCGGCGAAATTGTGAATTATATTGCAGTTGAAGCATATAGAATGGGAGAATTTCCATGGTGGTTTCATATAACATGGACTTGTGCATTGCAACTTGTTCTGTCCATTGTTGTCCTTTTTGGTGTTGTTGGTATTGGTGCTCTTCCTGGTATAGTCCCTCTTATTATATGTGGACTACTCAATGTACCATTTGCAAGGATCCTACAAATTTGTCAGTCACAGTTTATGATTGCACAGGACGAACGTCTTAGATCAACTTCCGAGATTCTAAATAGTATGAAGATCATTAAATTACAATCATGGGAAGAAAAATTTAAGAACTTAGTTGAGTCATTACGTGATAAAGAGTTTGTATGGTTGTCTAAGGCGCAGATTCTGAAAGCTTCTAGCTCATTTCTTTTTTGGATGTCTCCTACAATTATATCATCTGTTGTTTTCTTTGGATATGCTATTTCCAAGAGTGCACCATTGAATGCTCAAACCATTTTCACAGTTCTTGCAACATTGAAGAGCATGGGAGATCCTGTTAAAATGATTCCAGAAGCTCTATCCATTTTGATTCAAGTTAAGGTTTCCTTTGATCGTCTTAATAACTTTTTGCTTGATGAAGAACTGCACAATGATGGTAGTGATATAAACATAAAGCAATGTTCAGCTAATGTTGTGGAAATTCAAGCTGGCAACTTCACTTGGGATCGTGAATCTGTGTCCCCAACTTTAACCGATGTTAATTTAAAAATCAAACGGGGACAGAAAATAGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCTCTTCTGTATGCAATACTAGGAGAGATTCCTAAGATTCAAGGAACTGTTAATGTAGGTGGCACTCTTGCCTATGTTTCTCAGTCTTCATGGATACAAAGTGGAACAGTTCGAGATAATATACTCTTTGGCAAGCCAATGAACAAAACAAGATATGAGAATGCTATTAAAGCTTGTGCCTTGGATGAGGATATCAATGATTTTAGTCACGGGGATCTTACCGACATAGGTCAGCGAGGGATTAACATAAGCGGAGGACAAAAGCAAAGGATTCAACTAGCTCGAGCAGTCTACAACGATGCTGATATCTATCTCCTCGATGACCCTTTCAGCGCAGTTGACGCGCACACTGCTGCTATTCTGTTCAAAGACTGCATTATGACTGCTCTAAGAGAGAAAACAGTCATTCTTGTGACACATCAAGTGGAGTTTCTCTCCGAAGTTGTTGATACAATATTGGTAATGGAGGATGGAAAAGTTATTCAATCAGGTAGTTATGAGAATCTACTAAAATCTGGGACAGCCTTTGAACAACTTGTGAACGCTCATAAAGACGCAGTTACTGGGTTGAATCAAGATAACAAAAATCAATTGGAGGTTCTGAAAATGATGTTTTGCCTAATCAACAAGAATTATATTTCGTATTCCAAAGGGTCATTGTTGCTGTGTTTCATTGTGTTAGCACAATGTGCTTTTATGGCTTTGCAGACTGCACCATCCTTTTGGCTTGCTATTGCCATTGAAATTCCAAAAGTAACTAGTGCCAACTTGATTGAAGTTTATTCATTAATTTCTTTTACTGGTGTTATGTTTGTATATATAAGGTCTTACTTGATGGCGCTTCTCGGATTAAATGCTTCTATTGCCTACTTCTCTAGCTTCACTACAGCTATCTTCAATTCTCCTATGATGTTCTTTGATTCTACGCCGGTAGGAAGGATTTTAACCCGAGTAAGATTTCTTTATTCCTTCTCTTCATCAGATTTGAGTATTTTGAACTTTGATATGCCTCATGCCGTCCACTTTGCCTTAAAAATAGCAATTGAAGTTCTGGTAATAATTTGCATAATGGCTTCAGTCACATGGCAAGTTCTCGTTGTTGCTGTTCCTGCAATGGTGGCATCAATATTCAATCAGCAATATTATCAAGCAACTGCAAGGGAACTAATGCGGATCAACGGAACCAAAGCACCAGTCATGAATTTTGCAGCTGAGACATCAGTTGGAGTGGTTACTATAAGAGCATTCAACATGGTAGACAGACTTATGAAATACTACTTAAAACTTGTGGACACAGACGCTACGTTGTTCTTTCATTCTAATGTCGTCATGGAATGGATGGTTATAAGGATTAAGGCACTTCAAACTTTGACAGTTATCACTGCAACATTGTTGCTTATTCTACTTCCTCATGGATATGTGTCTCCAGGAGCCAAAATATTTTGGACTAGATGGTTTTCCAACTTATCAAACAACATAATCACTGTTGAAAGAATCAAGCAGTTCATCGACATTCCAGCCGAGCCTCCTACCATTATTAGATATCGTCCGAATGCTCCATTAGTCCTTAAGGGAATCACTTGTACATTTAAAGAAGGGAGTAGGGTGGGAGTTGTTGGAAGGACCGGAAGTGGAAAAATTTTCTGGGCGCCACTTAAGTGGCGTTTTCTGTTTGTTTTTTGCTCATTTCAAAATCGCCACTTAAGTGGCGTTTTTTCCAGGGTTATTTTCGAAATTTCGCAGTGCGGGAGAGAACTTTTGGAAGTGGGAAGAGAAATTTTCATAGGGTTGAAGGATTTGAGAATGAAGCTAAGCATCATTCCTCAAGAACCAACACTTTTCAAGGGAAGCATTAGGACAAACATGGACCCTCTAGGTCTATACTCAGATCATGAAATATGGAAGGCTTTGGAGAAATGTCACCTTAAGGAAACAATCAACAAGCTACCAAGTCTCTTGGACTCTTCTGGTTATCGGTGTCCAAACGCATGTGTTTGCATTCAATTAATTAATTTTCTCAAATTATCACCTATGTCACGTATCTGTGTCTGTGTCATGTCCGAGTTAGTGCTTCATAGTATGTTACTACTTTTGTTTTCTAGTACTAGTAAACTGGTGGAATATGATAAGCCTTCAAAGCTAACGGAAACCAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGTCTAGCTACAAGAAGAGTTCCATCCCAAGCATTAGCATACAGCAACAATGA 3783 0.3825 MVYFESTTGDFSWVCLKDFDFTSLCSLRSAIDTINILFVCVYYMSLAISLNRKTSANRSYTKSWFFFFYWLLSWLACIIRGIVWISLTVSLLVQQPLLAQKCETKQTGLGHATLLSKLVFSWVNSLLTMPIKTVHAWESLVRERTKNNTTNLVLWSIVKTYLKGNILIAFYALLRTICVVVSPLILYAFVNYSKGFSIVGFLILTKLIESLSQRHWFFNSRRLGMKMRSALMVAVYEKQLKLSSSARTRHSAGEIVNYIAVEAYRMGEFPWWFHITWTCALQLVLSIVVLFGVVGIGALPGIVPLIICGLLNVPFARILQICQSQFMIAQDERLRSTSEILNSMKIIKLQSWEEKFKNLVESLRDKEFVWLSKAQILKASSSFLFWMSPTIISSVVFFGYAISKSAPLNAQTIFTVLATLKSMGDPVKMIPEALSILIQVKVSFDRLNNFLLDEELHNDGSDINIKQCSANVVEIQAGNFTWDRESVSPTLTDVNLKIKRGQKIAVCGPVGAGKSSLLYAILGEIPKIQGTVNVGGTLAYVSQSSWIQSGTVRDNILFGKPMNKTRYENAIKACALDEDINDFSHGDLTDIGQRGINISGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFKDCIMTALREKTVILVTHQVEFLSEVVDTILVMEDGKVIQSGSYENLLKSGTAFEQLVNAHKDAVTGLNQDNKNQLEVLKMMFCLINKNYISYSKGSLLLCFIVLAQCAFMALQTAPSFWLAIAIEIPKVTSANLIEVYSLISFTGVMFVYIRSYLMALLGLNASIAYFSSFTTAIFNSPMMFFDSTPVGRILTRVRFLYSFSSSDLSILNFDMPHAVHFALKIAIEVLVIICIMASVTWQVLVVAVPAMVASIFNQQYYQATARELMRINGTKAPVMNFAAETSVGVVTIRAFNMVDRLMKYYLKLVDTDATLFFHSNVVMEWMVIRIKALQTLTVITATLLLILLPHGYVSPGAKIFWTRWFSNLSNNIITVERIKQFIDIPAEPPTIIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKIFWAPLKWRFLFVFCSFQNRHLSGVFSRVIFEISQCGRELLEVGREIFIGLKDLRMKLSIIPQEPTLFKGSIRTNMDPLGLYSDHEIWKALEKCHLKETINKLPSLLDSSGYRCPNACVCIQLINFLKLSPMSRICVCVMSELVLHSMLLLLFSSTSKLVEYDKPSKLTETNSSFSKLVAEYWSSYKKSSIPSISIQQQ* 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3879 1260 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 166 439 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal8g3879 1260 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 726 1172 - -
Mal8g3879 1260 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 38 708 - -
Mal8g3879 1260 SUPERFAMILY ABC transporter transmembrane region 154 453 IPR036640 GO:0005524|GO:0016021
Mal8g3879 1260 CDD ABC_6TM_ABCC_D2 733 1018 IPR044726 GO:0140359
Mal8g3879 1260 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 475 697 IPR003439 GO:0005524
Mal8g3879 1260 SUPERFAMILY ABC transporter transmembrane region 736 1025 IPR036640 GO:0005524|GO:0016021
Mal8g3879 1260 SMART AAA_5 500 674 IPR003593 -
Mal8g3879 1260 ProSitePatterns ABC transporters family signature. 598 612 IPR017871 GO:0005524
Mal8g3879 1260 CDD ABCC_MRP_domain1 473 674 - -
Mal8g3879 1260 Gene3D ABC transporter type 1, transmembrane domain 153 448 IPR036640 GO:0005524|GO:0016021
Mal8g3879 1260 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 726 1172 - -
Mal8g3879 1260 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 38 708 - -
Mal8g3879 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 697 IPR027417 -
Mal8g3879 1260 CDD ABC_6TM_ABCC_D1 167 447 IPR044746 GO:0140359
Mal8g3879 1260 Gene3D - 449 719 IPR027417 -
Mal8g3879 1260 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 739 993 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal8g3879 1260 Pfam ABC transporter transmembrane region 740 982 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal8g3879 1260 Pfam ABC transporter transmembrane region 198 419 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal8g3879 1260 Pfam ABC transporter 491 625 IPR003439 GO:0005524
Mal8g3879 1260 Gene3D ABC transporter type 1, transmembrane domain 726 1025 IPR036640 GO:0005524|GO:0016021
Mal8g3879 1260 Gene3D - 1026 1229 IPR027417 -
Mal8g3879 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1010 1166 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3879 Mal-Chr8 112713798 112731914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3879 471 688 Calmodulin-binding Proteins AT2G36910 26.293 6.49e-18 88.2