Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3874 ATGGCTGAATTCACAGAAAATTTTCAAAATATTATTAGACCCTCTTTTTCTTTTCTTGATTCTGATCAAAGCATGGAACTATTGAATCAATTCATGGAAAATTCAAACATGAACATGATGCAGAATTTGATGCCATTTTCTTGTGACAATAGTATCTTGGAACATCATCAACAACATGAACATGAATTTCCAAGAAACTTGGAAGAGAATTTTCATGGTCTTGTCCATCATGTCAATAATCATAATCACAATGCAGTTCAAGTTTCACTTCCAACAATTTTTCAAGAAGAAAATAAAGTTCATCATGAAGGTAAAAAGAGGAAAATGATGGATTTTCAAGAGACCAGTTCTGCAAATTCAACTCCTGCAGTTTCTGAGAGTGGAAGCAAAACAAAACTTAGTGGTGAAAGAGGAAAAAGAGTGAAAAACTATGAAACAGAAGAAGAGAAAGCAAAAGAAGTTGTTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATTAATGAGAAATTAAAGTGCTTGCAGAATATTGTTCCAGGATGTTACAAGACCATGGGAATGGCAGTAATGTTGGATGAAATCATAAACTATGTTCAGTCTTTGCAGAATCAAGTAGAGTTTCTTTCTTTGAAGCTTACTGCAGCAAGTACCTATTATGACTTCAATTCAGAGACAGATGATCTAGAAACAATACAGAGAGCAAGGGCATCTGAGGCAAAAGAGTTAGCAAGGTATAAGAGAGAAGGATATGGAGGAATTTCTTGCTTTCAACCAACTTGGCCACTTTGA 825 0.3503 MAEFTENFQNIIRPSFSFLDSDQSMELLNQFMENSNMNMMQNLMPFSCDNSILEHHQQHEHEFPRNLEENFHGLVHHVNNHNHNAVQVSLPTIFQEENKVHHEGKKRKMMDFQETSSANSTPAVSESGSKTKLSGERGKRVKNYETEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSLKLTAASTYYDFNSETDDLETIQRARASEAKELARYKREGYGGISCFQPTWPL* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3874 274 Coils Coil 240 260 - -
Mal8g3874 274 PANTHER TRANSCRIPTION FACTOR BEE 1 2 273 - -
Mal8g3874 274 Pfam Helix-loop-helix DNA-binding domain 167 214 IPR011598 GO:0046983
Mal8g3874 274 MobiDBLite consensus disorder prediction 113 131 - -
Mal8g3874 274 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 230 IPR036638 GO:0046983
Mal8g3874 274 SMART finulus 169 219 IPR011598 GO:0046983
Mal8g3874 274 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 213 IPR011598 GO:0046983
Mal8g3874 274 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 273 IPR024097 GO:0006355
Mal8g3874 274 MobiDBLite consensus disorder prediction 113 141 - -
Mal8g3874 274 CDD bHLH_AtBPE_like 153 238 - -
Mal8g3874 274 Gene3D - 163 225 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3874 Mal-Chr8 112628519 112630637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3874 45 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 52.675 1.76e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal8g3874 HLH 6.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3874 - - gmx:100806942 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g3874 8 112628519 112630637 Mal8g3874 8 112628519 112630637 ECH