Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3868 ATGTATACTAGTAAAGATGATAATGATCTTAGAAGGGGACCTTGGACTCTTGAAGAGGATGAGTTCCTCATCAAACACATTGCTAATCATGGTGAAGGGAGATGGAATTTCTTGGCTATGAGTTCAGGATTAAGGAGGACGGGAAAGAGCTGTAGATTAAGATGGCTAAATTATTTAAAGCCAGACATAAAGAGAGGAAACTTAACCCCAGAAGAAAAGTTTTTGATTTTTGAACTCCACTCAAAGTGGGGAAACAAGTGGTCAAGGATTGCACAAAACTTACCAGGCAGAACAGACAATGAAATCAAAAACTATTGGAGAACATGTAAAAAACAAGCAAGTCATTTGAAATTTGAAATAAATGGAAGAGGATTTCTAGGCTTTGTTAATCCTTTAAGAAGAATAACATGTCATGAAAGATCAAAAGAACCATCCAATTCAACCACAACCATCCAAAACAAATCAATTCCTTTGCCACTTGAAGGTGTTACTCATTATTCATCAGTTGGAACAATACCAACACAAGTCCCTTATAAGGATCTTTATGAGATAAACTCAGTATCTGAGCACAACAATGGTTTACGCATGTCTTCTTCAGAATCAACAAATATGCCAAATATTATGACTCGGTCTTTGGAAATCACAACTGGTCAATTTCAGTCCTTAGATAACAGTGAGTTTGACATAAGTGCTTATGATGGTTACCTCATAAATAATAATTCCTTGAACTTGAAAACTACAATGGTTGCTGAGGATTTGGAATACCAAGTTGGGGATGTCCAAATGTCAGAAAACAATTGGCTTGACAAAGAATTTGCATGTACTAGCAGATGGGACCTGAATGAATTGTTGCAAGTTAGGAACACTCAAAAGTGA 876 0.3619 MYTSKDDNDLRRGPWTLEEDEFLIKHIANHGEGRWNFLAMSSGLRRTGKSCRLRWLNYLKPDIKRGNLTPEEKFLIFELHSKWGNKWSRIAQNLPGRTDNEIKNYWRTCKKQASHLKFEINGRGFLGFVNPLRRITCHERSKEPSNSTTTIQNKSIPLPLEGVTHYSSVGTIPTQVPYKDLYEINSVSEHNNGLRMSSSESTNMPNIMTRSLEITTGQFQSLDNSEFDISAYDGYLINNNSLNLKTTMVAEDLEYQVGDVQMSENNWLDKEFACTSRWDLNELLQVRNTQK* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3868 291 SUPERFAMILY Homeodomain-like 9 106 IPR009057 -
Mal8g3868 291 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 250 IPR044676 GO:0003700|GO:0006355|GO:0043565
Mal8g3868 291 CDD SANT 69 110 IPR001005 -
Mal8g3868 291 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Mal8g3868 291 Pfam Myb-like DNA-binding domain 65 109 IPR001005 -
Mal8g3868 291 ProSiteProfiles Myb-like domain profile. 60 108 IPR001005 -
Mal8g3868 291 Gene3D - 68 109 - -
Mal8g3868 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 114 IPR017930 -
Mal8g3868 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 63 IPR017930 -
Mal8g3868 291 Gene3D - 12 64 - -
Mal8g3868 291 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Mal8g3868 291 CDD SANT 14 59 IPR001005 -
Mal8g3868 291 SMART sant 11 61 IPR001005 -
Mal8g3868 291 SMART sant 64 112 IPR001005 -
Mal8g3868 291 PANTHER OS01G0128000 PROTEIN 4 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3868 Mal-Chr8 112507030 112508280 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3868 7 150 MYB Transcription Factor Family AT1G68320 62.759 3.54e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal8g3868 Myb_DNA-binding 2.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3868 K09422 - gmx:100804227 322.013