Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3855 ATGGCGACGCCGTTAATCCCGCAACAGCAGCACTTAGACGGCGGCGGAGGAGTGGCGGTTCTGGCGAATCTCGTTCCTCCGTCTTCTTCTTCCTCCAATGGTGATGGTGGATTCAACCGTACCTCTTTATCAGAATCGCCAATTTTGATTTTCTCGTATTTCCAAAAAGCGATTGGGAACGAGCTTGATGCGTTGCATCGATTAGCTATAGCGTTTGCTACCGGAAATTGTTCCGATATTGGACCGTTATCGGAGCGTTATCATTTTCTTAGATCGATGTATAGACACCATTCCAATGCTGAAGATGAGGTGATTTTTCCAGCCCTAGATAGGCGTGTAAAGAACGTAGCACAGACATATTCTCTTGAACACAAGGGGGAAAGCAATCTTTTTGACCATTTATTTGAGCTTTTAAACTCTTCCGGTGACAATGATGAAAGTTTCCGAAGGGAGTTAGCATCCTGCACAGGAGCTCTGCAGACATCTGTTAGTCAACACATGGATAAGGAGCAGCAGCAAGTTTTTCCGCTGCTTATTGAGAAGTTCTCCGTGGAGGAGCAAGCATCTTTAGTTTGGCAGTTTCTTTGCAGTATTCCAGTGAATATGATGGCAGAATTTCTTCCATGGCTTTCGACTTCCATATCACCTGATGAATCTCAGGACTTACGGAAGTGCTTAAGCAAGATAGTGCCAGAGGAAAAGCTTCTTCAAAAGGTTATTTTCACCTGGATGGAACGGCGAAGTAGTGCTAACACAGTTGAAAAATGTGTAGATCATTCTCAGGTTCAATGTAGTCCTAGTCCTTTAGCCCATCAGAATGGAAAAGTAACATGTGCATGTGAGTCGACTGTATGTGGGAAAAGAAAATATTCTGAATCTCTTCTAGATGATGTTCCTGAGACAATGGGTTCACATCCTATAGATGAAATATTGCTCTGGCATAATGCTATAAAAAAAGAGTTAAATGAGATAGCAGTGGAGACCAGAAAGATACAACACTCCGGAGATTATACTAATCTGTCTGCTTTTAATGAAAGGTTGCAATTCATCGCTGAAGTTTTCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCGGCAGTAGATGGGGATTTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGATCTTTGATTGAAAGAATTGTAAGTGAAGAAGCAACGTCTAGTTCAGAAGTTGAACTTTATTCCAAGTTGTGCTCACAGGCGGATCATATAATGGAAACCATACAGAAGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCGCTTGCACGGAAGCACTTTAGCTTCAAAAGGCAACGTGAACTAGTGTATGAAAGCTTGTGTATGATGCCTCTGAAATTGATTGAGCGTGTCCTGCCATGGTTTGTTGGATCATTAACTGAAGATGAAGCAGAGATATTTCTGAGAAATATACAATCGGCAGCTCCAGCAATGGATTCTGCTTTAGTCACACTCTTCTCTGGTTGGGCTTGCAAGGCTCGTAAAAATGGTCAGTGCTTGTCTTCAAGTGCATCACGTTTCTGTCCTGCTAAAAAAATAGTTCGGTCTTCCTGTGCTTGTGCTTCTGCATTGTCTGGTAAAGATTGCTCAGTATTAGCTGAATCAGATGGGACCCAAAGACCAGTCAAGCGAAGCATATTAGAGTTGCAAAAAAATGGAGATGTCTCAAAAACACCAGAAAGTGAATGTGCCCTGAAACCATGTTGTGGTGCCCGGTCATGTTGTGTGCCAGCATTAGGGGTCAACGGTAACAATTTGGGGCTGAGTTCACTTTCTGCAGCCAAGTCCTTACGGAGCTTTACTTCTTCCGCCCCATCTATTAATTCTAGTCTTTTCATATGGGAAACAGACAGCAGCTCATGTGATGTTGGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGCATAGATTTGGAGTATTTAGATGTTGAATCTGGAAAGCTTTGTGATGGCGATGAAGCAACTATTCGGCAATTTACTGGAAGATTTCGTCTTTTGTGGGGTTTATACAGAGCTCATAGTAACGCTGAAGACGATATAGTTTTTCCTGCATTGGAATCCAAAGAGACACTTCATAATGTGAGCCATTCATACACGCTGGATCATAAGGCGGAAGAAAAGTTATTTGAAGATATTTCTTGTGTTCTTTCTGAGCTTTCTGTCCTTCATGAAGCATTGCAGAGTACCCATATGTCAGAGGATTTAAGTGAACATAATTTGGGAATATCTGATGCCAATGATAGTGATGATATTAGAAAGTATAACGAGCTTGCAACTAAGCTACAAGGGATGTGTAAATCTATACGAGTGACCCTGGATCAACATATTTTCAGGGAAGAGCTCGAACTCTGGCCATTGTTTGGGAAACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACAGGGGCCGAAGTTCTCCAGTCAATGTTACCGTGGGTGACTTCTGCACTTACACAAGATGAACAGAACCAAATGATGGACACATGGAAACAAGCAACTAAGAATACAATGTTCAATGAATGGCTAAATGAAAGCTTGATAGAGAGTCCAGGATCTACATCACAGACAGAAACATCAGAACACAGCACTTCTGAAAGAGGTGCTGAATATCAAGAAAGCTTGAACCTGAATGATCAGATGTTTAAGCCGGGTTGGAAAGACATATTCCGGATGAATGAGAATGAAATTGTGTCTGAAATCCGGAAGGTATATCGTGACTCAACGCTTGATCCAAGGAGAAAGGCATACCTGGTGCAGAATCTCATGACAAGTCGCTGGATAGCTGCCCAACAGAAGTTACCTAAATCTCAATCTGGGGAGTCATCTAATAAACAAATAGAAGGATGTGTACCTTCATTTCGGGACCCAGAGAAACAAGTATTTGGTTGTGAGCACTATAAGAGAAATTGCAAAGTTCGAGCTGCTTGTTGTGGGAAGTTTTTTACATGCAGATTTTGTCATGACAACAATTCAACTGATCACTCAATGGATAGAAAAGCAACAACGGAAATGATGTGTATGGCCTGCCTGACTATACAGCCAGTTGGACCCATATGCATGACGCCTTCGTGTAACGGACTTTCAATGGCAAAGTACTACTGTAACATTTGCAAATTTTTTGATGATGAAAGGAATGTTTACCATTGCCCATTTTGCAATATATGCCGTGTTGGGCAAGGGCTTGGCATTGATTACTTTCATTGTATGAAATGCAATTGTTGTGTGGGGATCAAATCAGTGTCTCACAAGTGCCGGGAGAAAGGCTTAGAAATGAACTGCCCAATTTGTTGTGACGACTTGTTCACATCAAGTGCAACGGTCAGAGCTCTAGTTTGTGGGCATTACATGCATTCGTCTTGCTTTCAGGCATACGCTTGCAGTCACTACACATGTCCAATATGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCATTGCTAGCTGCTGAGCAGCTTCCTGAAGAGTACAGAGACCGCACTCAGGACATACTCTGTCATGACTGTGATCGAAAGGGAACTTCACACTTCCACTGGCTATATCATAAATGTGGATTTTGTGGCTCATATAATACCCGGGTGATCAAGGGTGAGACAACGAATTCCAGCTGCCCTTGA 3714 0.42 MATPLIPQQQHLDGGGGVAVLANLVPPSSSSSNGDGGFNRTSLSESPILIFSYFQKAIGNELDALHRLAIAFATGNCSDIGPLSERYHFLRSMYRHHSNAEDEVIFPALDRRVKNVAQTYSLEHKGESNLFDHLFELLNSSGDNDESFRRELASCTGALQTSVSQHMDKEQQQVFPLLIEKFSVEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPDESQDLRKCLSKIVPEEKLLQKVIFTWMERRSSANTVEKCVDHSQVQCSPSPLAHQNGKVTCACESTVCGKRKYSESLLDDVPETMGSHPIDEILLWHNAIKKELNEIAVETRKIQHSGDYTNLSAFNERLQFIAEVFIFHSIAEDKVIFPAVDGDFSFFQEHAEEESQFNDFRSLIERIVSEEATSSSEVELYSKLCSQADHIMETIQKHFHNEEVQVLPLARKHFSFKRQRELVYESLCMMPLKLIERVLPWFVGSLTEDEAEIFLRNIQSAAPAMDSALVTLFSGWACKARKNGQCLSSSASRFCPAKKIVRSSCACASALSGKDCSVLAESDGTQRPVKRSILELQKNGDVSKTPESECALKPCCGARSCCVPALGVNGNNLGLSSLSAAKSLRSFTSSAPSINSSLFIWETDSSSCDVGSAERPIDTIFKFHKAIRIDLEYLDVESGKLCDGDEATIRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKAEEKLFEDISCVLSELSVLHEALQSTHMSEDLSEHNLGISDANDSDDIRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNQMMDTWKQATKNTMFNEWLNESLIESPGSTSQTETSEHSTSERGAEYQESLNLNDQMFKPGWKDIFRMNENEIVSEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKSQSGESSNKQIEGCVPSFRDPEKQVFGCEHYKRNCKVRAACCGKFFTCRFCHDNNSTDHSMDRKATTEMMCMACLTIQPVGPICMTPSCNGLSMAKYYCNICKFFDDERNVYHCPFCNICRVGQGLGIDYFHCMKCNCCVGIKSVSHKCREKGLEMNCPICCDDLFTSSATVRALVCGHYMHSSCFQAYACSHYTCPICSKSLGDMAVYFGMLDALLAAEQLPEEYRDRTQDILCHDCDRKGTSHFHWLYHKCGFCGSYNTRVIKGETTNSSCP* 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3855 1237 CDD RING-H2_Pirh2 1120 1163 - -
Mal8g3855 1237 Pfam Hemerythrin HHE cation binding domain 305 439 IPR012312 -
Mal8g3855 1237 Pfam Hemerythrin HHE cation binding domain 645 808 IPR012312 -
Mal8g3855 1237 Pfam Hemerythrin HHE cation binding domain 58 178 IPR012312 -
Mal8g3855 1237 Pfam Zinc-ribbon 1168 1225 IPR039512 -
Mal8g3855 1237 SMART ring_2 1121 1162 IPR001841 -
Mal8g3855 1237 MobiDBLite consensus disorder prediction 876 895 - -
Mal8g3855 1237 Pfam CHY zinc finger 991 1067 IPR008913 GO:0008270
Mal8g3855 1237 Gene3D - 1191 1234 - -
Mal8g3855 1237 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 27 1237 - -
Mal8g3855 1237 SUPERFAMILY Zinc hairpin stack 1058 1113 IPR037275 -
Mal8g3855 1237 CDD Hr-like 50 176 - -
Mal8g3855 1237 Gene3D nmb1532 protein domain like 641 881 - -
Mal8g3855 1237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1117 1165 IPR013083 -
Mal8g3855 1237 ProSiteProfiles Zinc finger CHY-type profile. 984 1054 IPR008913 GO:0008270
Mal8g3855 1237 CDD Hr-like 647 807 - -
Mal8g3855 1237 Gene3D nmb1532 protein domain like 46 196 - -
Mal8g3855 1237 Gene3D nmb1532 protein domain like 308 456 - -
Mal8g3855 1237 CDD Hr-like 308 437 - -
Mal8g3855 1237 Pfam Ring finger domain 1120 1162 IPR001841 -
Mal8g3855 1237 ProSiteProfiles Zinc finger RING-type profile. 1121 1163 IPR001841 -
Mal8g3855 1237 SUPERFAMILY CHY zinc finger-like 984 1048 IPR037274 GO:0008270
Mal8g3855 1237 ProSiteProfiles Zinc finger CTCHY-type profile. 1057 1120 IPR017921 -
Mal8g3855 1237 PANTHER CHY ZINC FINGER PROTEIN 27 1237 - -
Mal8g3855 1237 SUPERFAMILY RING/U-box 1119 1166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3855 Mal-Chr8 112227889 112236408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3855 1 1236 C2H2 Transcription Factor Family AT3G18290 66.322 0.0 1663
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g3855 8 112227889 112236408 Mal8g3855 8 112227889 112236408 ECH
Mal7g5277 7 122128674 122151274 Mal8g3855 8 112227889 112236408 PCT