Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3840 ATGAACAACACTAACAACAACAATGATAAACATTTACCTCCTCTCACTGTAAGAGCCATAGTTGAAGTTGATCTCAACAAGTGTGAATCATGGGAGCTACCTGAGAAAGCTAAGATGGGTGAGAAAGAGTGGTACTTCTTCAGTCCAACTGGGTTGCGTACAAATAGAGCATCAGAAGTTGGTTATTGGAAAGACAAAGAGATTTACAACTCAAAAACCTACTCTCTTGTTGGTATGAACAAAACCCTTGTTTTCTACATATATAGGAAGATTTCCTAA 279 0.3763 MNNTNNNNDKHLPPLTVRAIVEVDLNKCESWELPEKAKMGEKEWYFFSPTGLRTNRASEVGYWKDKEIYNSKTYSLVGMNKTLVFYIYRKIS* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3840 92 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 86 - -
Mal8g3840 92 SUPERFAMILY NAC domain 14 90 IPR036093 GO:0003677|GO:0006355
Mal8g3840 92 Gene3D NAC domain 3 91 IPR036093 GO:0003677|GO:0006355
Mal8g3840 92 ProSiteProfiles NAC domain profile. 1 92 IPR003441 GO:0003677|GO:0006355
Mal8g3840 92 Pfam No apical meristem (NAM) protein 13 88 IPR003441 GO:0003677|GO:0006355
Mal8g3840 92 PANTHER PROTEIN CUP-SHAPED COTYLEDON 3 19 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3840 Mal-Chr8 111705497 111705873 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3840 15 89 NAC Transcription Factor Family AT5G53950 67.059 4.38e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mal8g3840 NAM 3.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3840 - - cam:101501114 137.117