Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3801 ATGCCTGTTATCACAGAACACATGAAATGGAGAAGACCCAGAAACAAATTAAGGCACCCCATTTCAGAAACTGATCCAAGTTCACAACTTGCTTCCTTAATCCAATCCACCTCTTGCAAATCCACAATCTCCACTCTCTTTTCCACTTTCTCCAACAACAACACATCCAATGAAACAACACATAACAGACTCGGTTGCACTGCCGGTACATCACAGCAGGTGTCAGTACCGGCCGTGATTCGATCCTCTGCAGATTGGCAAGGGAAGGAGAACAGAAAAAAGAACAGAAGGAACAGTAACATTAACAGCAACAAAACATGTCATGGTGTTGATGATGTGGACTTTCAAGATGTTTGGTGTGGACCTGGCACTGGATTCTTAACTGATGCTGCTGATGTTTCTGTGGATTGTGTTGTTGCAAGAAAGAACGTTTCTTCAAGAGGGAAACTTGATAATGGAGAAAGGATAACACACAGAGAGCCTTCATCTTATTTTGGAAGGCGCAGTGTAAATCCAAATCAAGAAAGTTTGTCATTTTTGGATAATAATTCTGATGCACGTCGTGGATTAGATTCTTTTGGTAATTGTAGATTATTTCGAAATGCTTCACATCTTTCTTCTGATGGTATTGCTGAGATTATGAAATTTCAAGGAGCTAGACTAATGGGGGGACGATTAAATTCACGTGATCAATTTAGAGACTGGAGACTTGATGTTGATAATATGTCATATGAGCAATTGCTTGAGCTGGGAGAGAGAATTGGTTATGTGAAAACTGGACTTAAAGAAGATGAGATGAAACACAACATAAAGAAAATTAAGTTTTTGATTTCAGATGATTCATCAAAGCATCAAATAGACAAAAAGTGCACCATTTGTCAAGAGGAGTATGAATTAGATGATGAATTGGGGAGGTTAAATTGTGAACACTGCTATCACTTTCAGTGTATAAAACAATGGCTTGAGCTTAAAAATTTCTGTCCGGTATGTAAGCAAGAAGTCACAGTCCGACATTGA 1017 0.3874 MPVITEHMKWRRPRNKLRHPISETDPSSQLASLIQSTSCKSTISTLFSTFSNNNTSNETTHNRLGCTAGTSQQVSVPAVIRSSADWQGKENRKKNRRNSNINSNKTCHGVDDVDFQDVWCGPGTGFLTDAADVSVDCVVARKNVSSRGKLDNGERITHREPSSYFGRRSVNPNQESLSFLDNNSDARRGLDSFGNCRLFRNASHLSSDGIAEIMKFQGARLMGGRLNSRDQFRDWRLDVDNMSYEQLLELGERIGYVKTGLKEDEMKHNIKKIKFLISDDSSKHQIDKKCTICQEEYELDDELGRLNCEHCYHFQCIKQWLELKNFCPVCKQEVTVRH* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3801 338 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 4 338 - -
Mal8g3801 338 SMART ring_2 290 330 IPR001841 -
Mal8g3801 338 Pfam Ring finger domain 289 331 IPR001841 -
Mal8g3801 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 4 338 IPR045191 GO:0061630
Mal8g3801 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 336 IPR013083 -
Mal8g3801 338 MobiDBLite consensus disorder prediction 82 106 - -
Mal8g3801 338 SUPERFAMILY RING/U-box 289 336 - -
Mal8g3801 338 ProSiteProfiles Zinc finger RING-type profile. 290 331 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3801 Mal-Chr8 110224836 110229524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3801 4 245 C3H Transcription Factor Family AT1G73760 38.989 1.26e-35 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3801 - - gmx:100818517 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0380 5 5847469 5850736 Mal8g3801 8 110224836 110229524 ECH
Mal8g3801 8 110224836 110229524 Mal8g3801 8 110224836 110229524 ECH