Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3788 ATGGAAGAACCTATTGTTGTGAACAAAAGTGATGAAACTCTTGATTTGCCTCCTGGATTCAGATTCCACCCTAATGATGATGAAATCATTACTAGTTATTTGCTTAAGAAGGTGTTGAATAGTAGTTTTAGTGCAATTGCAATTGGTGAAGCTGATTTGAATAAGTGTGAGCCTTGGGATTTACCAAAGAAAGCTAAGATGGGAGAGAAAGATTGGTTTTTCTTTTGTCAAAGAGATAGGAAATATCCAACTGGAACAAGAACTAATAGAGCAACTGAATCAGGTTATTGGAAAGCTACTGGAAAAGATAAAGAGATCTACAAAGGGAAAACAAACCAACTTGTTGGAATGAAGAAAACTCTAGTGTTCTATAAAGGTAGAGCTCCAAGAGGAGAGAAAACCAATTGGGTCATGCATGAGTTTAGATTGGATGGAACATTAGCAACTTGCAACCTTCCTCAAAATGCAAAGGATGAATGGGTTGTGTCAAGGATTTTCCATAAGAACAACAATGAAGTTAAAAAGACTACTTCATTTTCCAATCTTTTAAGGATAAACTCAATAGGTGATGATTTATTGGATTTTTCTTCACTTCCACCTCTTGTGGATCCTCCTTTTAGCAACAACACCATTGATCATCATGACTTCAAAGGAATTAATCCTTCACCTTCATCATCAAATGGTATCTATTTCCCAAGCTACTTAATCAACAATGAAACTAACCTCACAAATTATCATGCCACCAACCAAGGGAATTTCAACAATCCAATGCAAAAAAGCACATTTTCATCACATCAACCTCAAACTCAAATCCAAGTTCCAAAAACACCCTTGAATCAGAACATGTTATCAAATTATTCTCATATGAATCAAGGGAGTTATAACAATGGTTACATTTATGGAATGGAAAATAAAGAGTGCAAGATGGAGCAATTCTCTACCAACAATTCTTTGGTAAGTGTATCACAAGACACATGCTTGAGCAATGACATAAACAATGACACCTCCTCTGTGGTCTCAATGCAAGAAAATGTGGGAAGGAATACAACATTGTATGAAGAACTTGAGGGTCCTTCATCAATTGGTCCCCTCTCAAACTTTGATTATTTGTGGGATAACTATTGA 1125 0.3582 MEEPIVVNKSDETLDLPPGFRFHPNDDEIITSYLLKKVLNSSFSAIAIGEADLNKCEPWDLPKKAKMGEKDWFFFCQRDRKYPTGTRTNRATESGYWKATGKDKEIYKGKTNQLVGMKKTLVFYKGRAPRGEKTNWVMHEFRLDGTLATCNLPQNAKDEWVVSRIFHKNNNEVKKTTSFSNLLRINSIGDDLLDFSSLPPLVDPPFSNNTIDHHDFKGINPSPSSSNGIYFPSYLINNETNLTNYHATNQGNFNNPMQKSTFSSHQPQTQIQVPKTPLNQNMLSNYSHMNQGSYNNGYIYGMENKECKMEQFSTNNSLVSVSQDTCLSNDINNDTSSVVSMQENVGRNTTLYEELEGPSSIGPLSNFDYLWDNY* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3788 374 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 322 - -
Mal8g3788 374 ProSiteProfiles NAC domain profile. 16 168 IPR003441 GO:0003677|GO:0006355
Mal8g3788 374 Gene3D NAC domain 25 173 IPR036093 GO:0003677|GO:0006355
Mal8g3788 374 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 8 322 - -
Mal8g3788 374 SUPERFAMILY NAC domain 12 169 IPR036093 GO:0003677|GO:0006355
Mal8g3788 374 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3788 Mal-Chr8 109998345 110000195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3788 1 341 NAC Transcription Factor Family AT5G18270 52.586 2.93e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mal8g3788 NAM 6.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3788 - - cam:101514407 555.829