LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal8g3773	ATGGTTGATTCTAACTCCATTAACGATGACCCATCAAAGTTTCCATCGTTTTCAACCGATTCACCTAATGATGCAGGGAATGATGTCAAGTTGAGCTCTAAGGACCAGAGAGATGCTCTGCCAGGTGAGCCCAAGTGTATTGTATGTGGCCGCTACGGTGAATATATATGCGATGAAACTGATGATGATGTTTGCAGTTTGGAATGTAAGCAATTGGTACTATCTCGAATTTCCAAAACCTCATCTTGTGCTGGAGGTCTTCCACCGCCTAAAAAGCTACCTGCAGCTGATGAGTGCTTTTATGTTAGAGATACTGATAACAAATCAGGAACGCCGTCTTTAGGAGGTGATCAGAGTCAGGCTGAATTACTTCGAAAGAAACTCGACATTCATGTGAAGGGTGTTGTTTCAGCACCGGTTTTGTCGTTCGCTTCATGTAATCTCCCTGATAAACTCCTACACAACATAGAAGCAGCTGGATATGAGATGCCTACACCTGTCCAAATGCAAGCAATCCCTGCTGCTTTGATCGGGAAGAACATGCTTGTTTTGGCTGATACAGGATCCGGAAAGTCTGCTTCGTTTCTTATTCCAATAATTTCTCGTTGCGCGAGTCATCGTTCGACTTATGTTTCGGATAAGAAAAAGCCTTTAGCTATGGTGTTAACACCTACGAGAGAGCTCAGTATACAGGTTGAAGAGCACGCAAAATCGCTCGGAAAAGGGTTGCCATTTAAAACCGCACTTGTGGTTGGTGGTGATGCTATGGCTAGACAACTCTACCGCATCCAACAAGGAGTCGAGTTGATTGTGGGAACACCAGGAAGGCTTCTTGATCTTTTAACGAAGCATGAGATTGACTTAGACGACGTGGCAACTTTTGTTGTAGATGAAGTGGACTGCATGCTTGAAAGGGGTTTCCGAGATCAGGTCTTACAGATATTCACGGCTTTGTCACAACCTCAGGTCTTAATGTATTCCGCAACAATGTCTGATGGTTTAGAGAAGATGGCGAACTCTCTGGCAAAAGATACAGTGGTTATAACCGTTGGCGAACCTAACAGACCAAATAAGGCTGTGAAACAGCTAGCTATTTGGGTTGAGTCGAAACAAAAGAAGCAGAAACTGTTTGACATTTTAAAAAGCCAGAAACATTTTAAGCCACCGGTTGTAATATACGTCGGCTCGAGACTCGGCGCAGATCTCTTGGCAAACGCAATTACAGTTTCGACAGGAATTAAAGCTGTTTCAATTCACGGCGAGAAGTCTATGACTGAAAGGAGAGAAATAATGCAGTCATTTATGGTCGGCGAGTTTCCAGTGGTTGTGGCTACCGGAGTTTTGGGTAGAGGGGTTGATCTATTAGGTGTAAGACAAGTTATTGTATTCGACATGCCTAATTCGATTAAAGAATATGTACATCAAATAGGACGGGCTTCTAGAATGGGAGAGGAAGGTCAAGCCATAGTTTTTGTGAATGATGAGAATAAGAATGTTTTTGCAGAGTTAGTTGATGTATTAAAGTCGGGTGCGGCGGCTATACCTCGGGAGCTTATCAATTCACAGTATACTGCGCGATTTTTCTCTGGTGGAAAGGGTTCAAAGAAGAGAAAACATAGATGA	1623	0.4319	MVDSNSINDDPSKFPSFSTDSPNDAGNDVKLSSKDQRDALPGEPKCIVCGRYGEYICDETDDDVCSLECKQLVLSRISKTSSCAGGLPPPKKLPAADECFYVRDTDNKSGTPSLGGDQSQAELLRKKLDIHVKGVVSAPVLSFASCNLPDKLLHNIEAAGYEMPTPVQMQAIPAALIGKNMLVLADTGSGKSASFLIPIISRCASHRSTYVSDKKKPLAMVLTPTRELSIQVEEHAKSLGKGLPFKTALVVGGDAMARQLYRIQQGVELIVGTPGRLLDLLTKHEIDLDDVATFVVDEVDCMLERGFRDQVLQIFTALSQPQVLMYSATMSDGLEKMANSLAKDTVVITVGEPNRPNKAVKQLAIWVESKQKKQKLFDILKSQKHFKPPVVIYVGSRLGADLLANAITVSTGIKAVSIHGEKSMTERREIMQSFMVGEFPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQAIVFVNDENKNVFAELVDVLKSGAAAIPRELINSQYTARFFSGGKGSKKRKHR*	541

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal8g3773	540	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	141	169	IPR014014	GO:0003724
	Mal8g3773	540	SMART	helicmild6	401	483	IPR001650	-
	Mal8g3773	540	Gene3D	-	114	349	IPR027417	-
	Mal8g3773	540	Gene3D	-	350	525	IPR027417	-
	Mal8g3773	540	Pfam	Helicase conserved C-terminal domain	372	483	IPR001650	-
	Mal8g3773	540	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	288	497	IPR027417	-
	Mal8g3773	540	PANTHER	ATP-DEPENDENT RNA HELICASE DDX59-RELATED	27	526	-	-
	Mal8g3773	540	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	359	522	IPR001650	-
	Mal8g3773	540	SMART	ultradead3	160	363	IPR014001	-
	Mal8g3773	540	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	130	351	IPR027417	-
	Mal8g3773	540	CDD	SF2_C_DEAD	360	492	-	-
	Mal8g3773	540	Pfam	DEAD/DEAH box helicase	165	336	IPR011545	GO:0003676\|GO:0005524
	Mal8g3773	540	Gene3D	-	25	82	-	-
	Mal8g3773	540	Pfam	HIT zinc finger	44	70	IPR007529	-
	Mal8g3773	540	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	172	348	IPR014001	-
	Mal8g3773	540	MobiDBLite	consensus disorder prediction	1	39	-	-
	Mal8g3773	540	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	27	526	-	-
	Mal8g3773	540	MobiDBLite	consensus disorder prediction	1	29	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal8g3773	Mal-Chr8	109606536	109610436	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal8g3773	142	503	Eukaryotic Initiation Factors Gene Family	AT1G72730	32.967	7.27e-53	183

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal8g3773	K19466		-	gmx:100781473	827.394