Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3767 ATGATGCATTCAGAAAGTTATGAGAAGAAGAAGAAGAAACAAGATTCTGATGAAAAGAAGGAGAAACACCACTCATATTCGGCGCCGCTAGTGATAAAAGATCCGTCCGAACATGATTCTCATGCAAAAGAGAAGAAACCAAATATGATGAAGAGAAAATCTCATTCAGAAAGTTATGATGAAAAGAAGAGTAAGAAGAAGAAACAAGGTTCTGATGAAAAGAAGGAGAAACACCATTCAGAAAGCTATGATGAAAAGATGAAGCAACGATTAATCCTTGATGAAGAAGTTACCACCACCAAGAAGATGTTTATTGGTGAATCCTCTAGAAGCTCATGTGGTATATGCTTTGATTTGAAAACAGATTCTGATATGTTCAAAAGAAAAAGTTGCAACCACCTCTTTTGTGTTGATTGTATTTTCAAATATGTGGATTCTCAAATTAGCAATAATGTGGTTAAGGTGACTTGTCCAATTCCAAATTGTTCTGCGAAATTGTTGCCAAGACATTTGCAACATATTTTGCCTAAAGAATTTATCGATCGATGGGAATTGGCAAAGTATGAGTCTAAAATTGCATTGGAGCAAAAGACTTATTGTGCATTCAAGGATTGTTCTGTTTTGTTGGTGAATGATAATAATGAGGGAGTGGTTTTGACTAGTTGCGAGTGTCCGTCTTGTCATCGCCTATTCTGTGCACAATGTAAGGTTCCATGGCACGCGGAGATGAATTGTCAGGAGTTTCAACGCGATAAAAATGAAATAGATTTGGATGATAAGTTTTTGGAGTTGGCTAAAAGAAAGAAGTGGCAGAGATGTCCAAATTGCTCTATCTATGTCAAGAGAAGTCGTGGATGCGAACACATCGAATGCAGGTGTAAATGCAACTTCTGCTACCATTGTGGAAAGAAATGGAAGCATGGGCATCTATGCAAACAATAA 942 0.3705 MMHSESYEKKKKKQDSDEKKEKHHSYSAPLVIKDPSEHDSHAKEKKPNMMKRKSHSESYDEKKSKKKKQGSDEKKEKHHSESYDEKMKQRLILDEEVTTTKKMFIGESSRSSCGICFDLKTDSDMFKRKSCNHLFCVDCIFKYVDSQISNNVVKVTCPIPNCSAKLLPRHLQHILPKEFIDRWELAKYESKIALEQKTYCAFKDCSVLLVNDNNEGVVLTSCECPSCHRLFCAQCKVPWHAEMNCQEFQRDKNEIDLDDKFLELAKRKKWQRCPNCSIYVKRSRGCEHIECRCKCNFCYHCGKKWKHGHLCKQ* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3767 313 Gene3D - 243 313 - -
Mal8g3767 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 194 IPR013083 -
Mal8g3767 313 SUPERFAMILY RING/U-box 108 190 - -
Mal8g3767 313 SMART ibrneu5 181 245 IPR002867 -
Mal8g3767 313 SMART ibrneu5 255 311 IPR002867 -
Mal8g3767 313 ProSitePatterns Zinc finger RING-type signature. 131 140 IPR017907 -
Mal8g3767 313 SUPERFAMILY RING/U-box 259 311 - -
Mal8g3767 313 ProSiteProfiles TRIAD supradomain profile. 109 313 IPR044066 -
Mal8g3767 313 MobiDBLite consensus disorder prediction 1 88 - -
Mal8g3767 313 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 52 312 - -
Mal8g3767 313 ProSiteProfiles Zinc finger RING-type profile. 113 161 IPR001841 -
Mal8g3767 313 Pfam Zinc finger, C3HC4 type (RING finger) 113 158 IPR018957 GO:0046872
Mal8g3767 313 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 52 312 IPR031127 GO:0004842|GO:0016567
Mal8g3767 313 SUPERFAMILY RING/U-box 194 251 - -
Mal8g3767 313 Pfam IBR domain, a half RING-finger domain 186 245 IPR002867 -
Mal8g3767 313 Pfam IBR domain, a half RING-finger domain 264 310 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3767 Mal-Chr8 109492249 109493283 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3767 106 302 C3H Transcription Factor Family AT2G19610 29.126 8.29e-24 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3767 K11975 - mtr:MTR_0777s0010 498.434