Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3766 ATGGCACGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGTTTCCGCCATTCCTCGTGCTCGTGCTCCTGATGGAAGTGCCTTTCTCAAATGTGGAACATGTGGTGTGTCTGTTGCTATTGCCTTGGCTGATATGCATTATTGTGAGTCCAACAAGATTCAATTCAAAAGGTTACTCGGAATTGTTCCCAAACGAATCCTCCCTAACATTCAACAATTGATGAAGATCCAACCCATTTCGCCTTATCGTCTTTTTATGAAAAGCTTCATGAAGGGTCAAGACATGGAAAATTATAATATTGAAGTTGACAGGATAGGCTTTGAAAAGTGGAAAAATATGTCAGAGGAGGAGAGGCAACCATTTGTTTCTCGTGCTAGAGAATTGGACAATAAACACCAAGAAACTTTGAAACAGGAAGCTGATGAGATGATAAAGGTAAAGTATGGAGCAGATTCACCAATGGTTGAGATTCTTGAGAAGGTTGATAAGCCCCAATTGATATTTAGAGAATCTTCAGAGGACTCAAAAGAATAA 531 0.3955 MARRRRRRRRRRVSAIPRARAPDGSAFLKCGTCGVSVAIALADMHYCESNKIQFKRLLGIVPKRILPNIQQLMKIQPISPYRLFMKSFMKGQDMENYNIEVDRIGFEKWKNMSEEERQPFVSRARELDNKHQETLKQEADEMIKVKYGADSPMVEILEKVDKPQLIFRESSEDSKE* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3766 176 SUPERFAMILY HMG-box 77 137 IPR036910 -
Mal8g3766 176 CDD HMGB-UBF_HMG-box 77 136 - -
Mal8g3766 176 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 6 162 - -
Mal8g3766 176 Pfam HMG (high mobility group) box 77 134 IPR009071 -
Mal8g3766 176 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 74 139 IPR009071 -
Mal8g3766 176 Gene3D High mobility group box domain 74 146 IPR036910 -
Mal8g3766 176 PANTHER HMG-BOX (HIGH MOBILITY GROUP) DNA-BINDING FAMILY PROTEIN 6 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3766 Mal-Chr8 109439393 109444213 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mal8g3766 HMG_box 1.1e-05 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3766 - - aprc:113874504 143.665