LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal8g3730	ATGAAAGGCTATATATTCTTCTTTGTGACTTCACTTGGTCACCTTATTTTTGTGGTTTGCCAGATATTGCAAAACTCATGGATGGCTGCGAATGTTGACAATTCCCGTGTCACCATATTGCGATTGATTTCTGTTTATTTCATGATTGGAGTATCTTCAACATTTTTCATGTTGACCAGAAGTCTATTTGTAGTTGCTCTAGGTCTTCAATCGTCAAAATATTTATTTTTACAGTTGATTAACTCCCTCTTTCGTGCACCGATGTCTTTTTATGACTCTACACCATTGGGAAGGATACTAAGTAGGGTCTCATCTGATCTGAGCATTATGGATCTTGACATGCCCTTTGGTCTCAGTTCTGCAGTGGCAGCCACTATAAATTTGTATTCTAATCTTGCAGTTTTAGCAGTTGTGACTTGGCAAGTATTGATTGTGGCTATACCAATGGTTTATGTTACAATTTGCTTGCAGAGATACTCCTATGCCTCAGCAAAAGAAGTGATGCGGATGAGTGGTACAACAAAATCCTATTTAGCAAATCATGTAGCTGAAATTGTTGCCGGATCTGTAACAATAAGGACTTTTGAGGAGGAAGATCGTTTCTTTGAGAAGAATCTCGATCTAATTGACATTAATGCTAGTGCTTTTTTTCGTAGTTTTGCCTCAAATGAGTGGTTGATCCAACGGTTAGAAACAATTGGTCCAGTTGTTCTCGCCACTGCAGCGTTTTGCATGATTATTCTCCCCCCTGGAACATTCACCTCAGATGAGAATTTGGTCGTTATTATTTCCAAGATGTCATTGTTTGAGTATCTTGACGCAAGAATTATTGGCATGGCTCTATCTTATGGCCTTTCATTAAACAATTCCTTACAATATATGCATATAGAAAGTGAGGCAGAAGAAATAGTAGAAGACAATCGTCCTCCTTTGAATTGGCCAGTTGCAGGCAAAGTAGAAATAAATGACTTGAATGTTCTCGGGAAGTGCCAGTTGCGAGAAGTTGTCCAAGGGAAAGAAGAGGGTTTAAACTCCTCAGTTGTTGAAGATGGATCAAACTGGAGTATGCGACAACGACAGTTATTCTGTTTAGGGCGTGCTCTTTTGAGGCGAAGTAGGATATTGGTGTTGGACGAAGCAACGGCTTCAATCGATAATTCTACTGATCTTATTCTGCAGAAAACTATTAGGGCTGAGTTTGCAGATTGTACAGTGATCACAGTAGCACATTGGATACCAACTGTGATGGATTGCAGTATGGTTCTTGGTATAAGTTATGGAAAATTGGCGGAGTATGACGAGCCAATGAACTTGATGAAGAGAGAAGAATCGTTGTTCAGGAAGCTTGTCAAAGAATACTGGTCTCATTTTCAGTCTGCAGAATCACATTGA	1392	0.3944	MKGYIFFFVTSLGHLIFVVCQILQNSWMAANVDNSRVTILRLISVYFMIGVSSTFFMLTRSLFVVALGLQSSKYLFLQLINSLFRAPMSFYDSTPLGRILSRVSSDLSIMDLDMPFGLSSAVAATINLYSNLAVLAVVTWQVLIVAIPMVYVTICLQRYSYASAKEVMRMSGTTKSYLANHVAEIVAGSVTIRTFEEEDRFFEKNLDLIDINASAFFRSFASNEWLIQRLETIGPVVLATAAFCMIILPPGTFTSDENLVVIISKMSLFEYLDARIIGMALSYGLSLNNSLQYMHIESEAEEIVEDNRPPLNWPVAGKVEINDLNVLGKCQLREVVQGKEEGLNSSVVEDGSNWSMRQRQLFCLGRALLRRSRILVLDEATASIDNSTDLILQKTIRAEFADCTVITVAHWIPTVMDCSMVLGISYGKLAEYDEPMNLMKREESLFRKLVKEYWSHFQSAESH*	464

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal8g3730	463	Pfam	ABC transporter transmembrane region	5	248	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Mal8g3730	463	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY C	1	326	-	-
	Mal8g3730	463	PANTHER	ABC TRANSPORTER C FAMILY PROTEIN	1	326	-	-
	Mal8g3730	463	CDD	ABC_6TM_ABCC_D2	3	294	IPR044726	GO:0140359
	Mal8g3730	463	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY C	326	463	-	-
	Mal8g3730	463	Gene3D	-	296	452	IPR027417	-
	Mal8g3730	463	PANTHER	ABC TRANSPORTER C FAMILY PROTEIN	326	463	-	-
	Mal8g3730	463	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	325	450	IPR027417	-
	Mal8g3730	463	SUPERFAMILY	ABC transporter transmembrane region	8	248	IPR036640	GO:0005524\|GO:0016021
	Mal8g3730	463	Gene3D	ABC transporter type 1, transmembrane domain	2	295	IPR036640	GO:0005524\|GO:0016021
	Mal8g3730	463	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	15	248	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal8g3730	Mal-Chr8	107834111	107836814	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal8g3730	311	463	Calmodulin-binding Proteins	AT2G36910	26.282	1.99e-09	58.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal8g3730	K05666		-	mtr:MTR_8g042520	469.929