Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3710 ATGGCAGATCTTGTTAACTTAGGGAATGCTGCTGATCGTAACATTGATCAAGCGTTGATTGCTTTGAAAAAGGGTGCTCAACTTCTTAAATATGGTCGTAAGGGAAAGCCAAAATTTTGTCCATTTAGACTCTCCCCTGATGGATCATCTTTAATCTGGATTTCAAGTGGTGGCGAAAAAAAACTGAAGCTTTCTACTGTCTCAAGAATCATTCCTGGACAGAGAACAGCTGTTTTCCAACGGTACCTGCGTCCTGAGAAGGACTATGTATCTTTTTCACTTATTTATAATAACGGAAAGCGTTCCCTTGATTTGATTTGCAAAGATAAAGTTGAGGCAGATGTGTGGATTTCTGGTCTCAAAAAACTGATATCCTCAGGTCAAGGTGGTCGGTCCAAAATTGATGGATGGAGTGATGGTGGCCTCAATCTTGATGATAGCAAAGACTTAACATCCAATAGTCCAAGTGAAAGTTCAGCTAGTGCGTCACTAGACATCAGTTCTTCCGATACTTCTGTGAGTCTCCCAAACATTTCACCAAAGTCCTTTCGGCCCGACAGTACCTTGAATTCTGAAAGGTCACATGCACCATCAGAGTCAACAAATATGCAAATAAAAGGATCTGGTACAGAGACTGTTCGTGTTAGTGTTTCAAGTGCTACATCTAGTCATGGATCAGCACCAGATGACTACGATGCTCTTGCGGATGTGTACATATGGGGGGAAATTATCTGCGAAAACGTCAAAGTCGGTGCAGATAAAAGTGTCCATTATTTCTGCCCAAGGGCAGATCTGCTTCTCCCGAAACCAATGGAATCAAATGTAGTTTTAGACGTACAACATATAGCATGTGGTGTTAGACATGCTTCATTAGTAACTAGGCAAGGTGAAGTTTTTACGTGGGGTGAAGAATCAGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCGTTGACTTCTACAACTGTTGACTTTGTTGCATGTGGGGAGTTCCATTCCTGCGCTGTTACGATGACCGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGTTTGCTTGGTCATGGCTCTAATGCTAGTCATTGGATACCAAAGAGAATTGGAGGTCCATTAGAGGGACTTCAAGTTTCGTTTGTTGCTTGTGGTCCGTGGCACACCGCCTTGATTACTTCAACTGGCAAGCTCTTTACATTCGGTGATGGAACTTTCGGTGTCTTGGGACACGGAGATAGGGAAAATGTTTTGTATCCTAGAGAAGTGGAATCGTTGTTAGGGTTGAGGACAATAGCTGTTGCATGTGGTGTGTGGCATACTGCAGCTGTTGTAGAGGTTATCGCAACACAATCTATTGCTAGTTTATCGTCAGGTAAATTGTTTACTTGGGGCGATGGAGACAAAAATCGCCTCGGGCATGGGGACAAGGATGCACGACTTAAACCAACTTGTGTGCCTGCTATTATTGATTATAATTTTCAAAAAATTGCTTGTGGGCTTAGTTTGACAGTAGGACTGACAACATCAGGACGTGTTTTTACCATGGGAAGTACTGTTTACGGTCAGCTTGGGAATCCTCAGTCTGATGGGAAGCTTCCCTGCTTGGTTGGAGATAAGATTGCGTCGGAATCCGTTGAAGAAATTTCTTGTGGTGCATATCATGTGGCTGTTTTAACATCAAAAAATGAAGTTTATACTTGGGGTAAAGGTTCAAATGGGAGATTAGGTCATGGAGATATTGAAGATAGAAAAACGCCGACGTTGGTTGAAGCATTGAAAGATAGACATGTGAAATATATTGCATGTGGTTCAAATTACTCTGCCGCCATATGCCTTCATAAGTGGGTATCTGGTGCTGAGCAGTCTCAGTGTTCGGCCTGTAGGCAAGCATTCGGTTTCACTCGAAAGCGGCACAATTGTTATAATTGTGGGCTTGTGCACTGCCATTCATGCAGTTCAAAGAAAGCATTAAGAGCGGCACTTGCTCCTAATCCTGACAAGCCCTACCGTGTGTGTGATTCTTGTTACGCCAAATTGAGCAAGGTTGCAGAAGCTAACAATAATAATCGGAGGAATGCTTTGCCGCGTCTTTCGGGTGAAAACAAGGACAGGTTAGACAAGTCTGAGCCAAGATTGTCCAAGGCTCTTATTCCTTCAAACATGGATTTGATAAAGCAGCTAGATAATAAGGCAGCAAAACAAGGAAAGAAATCTGATACATTCTCGCTTGCTCGCAACTCACAGACACCTTTGCTACAGCTGAAAGATGTTGTCTTCTCCACTGCTGCTGATCTGAGACGAACAACTCCAAGACCGGTGATTGCACCATCAGGAATAAGTACGAGGTCCGCATCCCCTTTCTCTAGAAGATCAAGCCCTCCTCGTTCAGCTACACCTATTCCAACAATGTCTGGGCTTTCCTTCTCCAAAAATACTGCCAATAGTTTGAAGAAAACAAATGAACTTTTGAATCAAGAAGTGCAGAAGTTACGTGCTCAGGTCGAGAGCTTGAAACAGAAATGTGAACAGCAAGAATTAGAGGTTCAAAGGTCAGCAAAAAAGACTCAACAAGCTATGGCACTAGCTACTGAGGAGTCTACTAAATGCCAAGCTGCAAAAGAAGTTATAAAGTCACTTACGGCACAGCTCAAAGATCTAGCTGAGAAGCTTCCACCTGAAGTTTATGATGCTGAGAACATTAGACCAGCTTACCTACCAAATGGTCTCGAGTCGAACGGCATGCACTATCCGGATACAAATGGGGAGCAGGACTCGAGGGCGGAATCAATCAGTGGCTCAAGTTTGGCCTCCATAGGACTTGAATCCTCTCTTTTTAACAGAACTGCCCGTAATTTTCCAGGAGCCTATGGAACTAATTTACACCCGGAAATTCGGGGCATTGTGACCTCTAACGGAACGGGTAATTATCCAGAAGTTAAATTGTCAAATGGTGGCAGCGCGATTCAGTCAAGCAGTAGTACCTTGTCAGATATTGCTGAAGGGAGGGATTCTGGGAATTTCCGCGATGACGAGAGTGGTTTGAAATCGACAAATGCTGCACTGGCTACTAATAGTAATAATCGAGTTGATGCAGAATGGATTGAACAGTATGAACCTGGTGTCTATATAACACTGGTGGCCATGCATGATGGAACGAGAGATCTGAAACGAGTGCGCTTCAGCCGGAGGAGATTTGGAGAGAACCAAGCCGAAAATTGGTGGTCAGAGAACAAGGACAAGGTATACGAAAAATACAATGTTCGTATCGGGGACAAGTCTTCTAGCCAAGCGGCACATAAGGCAGAGGGTGCTGGTTCTCCTGTTTCCCAAACATAG 3360 0.4387 MADLVNLGNAADRNIDQALIALKKGAQLLKYGRKGKPKFCPFRLSPDGSSLIWISSGGEKKLKLSTVSRIIPGQRTAVFQRYLRPEKDYVSFSLIYNNGKRSLDLICKDKVEADVWISGLKKLISSGQGGRSKIDGWSDGGLNLDDSKDLTSNSPSESSASASLDISSSDTSVSLPNISPKSFRPDSTLNSERSHAPSESTNMQIKGSGTETVRVSVSSATSSHGSAPDDYDALADVYIWGEIICENVKVGADKSVHYFCPRADLLLPKPMESNVVLDVQHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNVVQPRLVEALTSTTVDFVACGEFHSCAVTMTGELYTWGDGTHNAGLLGHGSNASHWIPKRIGGPLEGLQVSFVACGPWHTALITSTGKLFTFGDGTFGVLGHGDRENVLYPREVESLLGLRTIAVACGVWHTAAVVEVIATQSIASLSSGKLFTWGDGDKNRLGHGDKDARLKPTCVPAIIDYNFQKIACGLSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVGDKIASESVEEISCGAYHVAVLTSKNEVYTWGKGSNGRLGHGDIEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPNPDKPYRVCDSCYAKLSKVAEANNNNRRNALPRLSGENKDRLDKSEPRLSKALIPSNMDLIKQLDNKAAKQGKKSDTFSLARNSQTPLLQLKDVVFSTAADLRRTTPRPVIAPSGISTRSASPFSRRSSPPRSATPIPTMSGLSFSKNTANSLKKTNELLNQEVQKLRAQVESLKQKCEQQELEVQRSAKKTQQAMALATEESTKCQAAKEVIKSLTAQLKDLAEKLPPEVYDAENIRPAYLPNGLESNGMHYPDTNGEQDSRAESISGSSLASIGLESSLFNRTARNFPGAYGTNLHPEIRGIVTSNGTGNYPEVKLSNGGSAIQSSSSTLSDIAEGRDSGNFRDDESGLKSTNAALATNSNNRVDAEWIEQYEPGVYITLVAMHDGTRDLKRVRFSRRRFGENQAENWWSENKDKVYEKYNVRIGDKSSSQAAHKAEGAGSPVSQT* 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3710 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 296 347 IPR000408 -
Mal8g3710 1119 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 626 688 IPR017455 -
Mal8g3710 1119 SUPERFAMILY RCC1/BLIP-II 236 623 IPR009091 -
Mal8g3710 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 403 451 IPR000408 -
Mal8g3710 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 296 344 IPR000408 -
Mal8g3710 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 517 566 IPR000408 -
Mal8g3710 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 571 618 IPR000408 -
Mal8g3710 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 348 399 IPR000408 -
Mal8g3710 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 465 512 IPR000408 -
Mal8g3710 1119 MobiDBLite consensus disorder prediction 145 226 - -
Mal8g3710 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 348 402 IPR000408 -
Mal8g3710 1119 Gene3D - 456 633 IPR009091 -
Mal8g3710 1119 MobiDBLite consensus disorder prediction 695 718 - -
Mal8g3710 1119 ProSiteProfiles BRX domain profile. 1039 1094 IPR013591 -
Mal8g3710 1119 MobiDBLite consensus disorder prediction 916 940 - -
Mal8g3710 1119 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1100 - -
Mal8g3710 1119 Pfam Transcription factor regulating root and shoot growth via Pin3 1039 1093 IPR013591 -
Mal8g3710 1119 Gene3D - 184 455 IPR009091 -
Mal8g3710 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 403 454 IPR000408 -
Mal8g3710 1119 MobiDBLite consensus disorder prediction 1099 1119 - -
Mal8g3710 1119 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 441 451 IPR000408 -
Mal8g3710 1119 MobiDBLite consensus disorder prediction 782 816 - -
Mal8g3710 1119 MobiDBLite consensus disorder prediction 921 940 - -
Mal8g3710 1119 MobiDBLite consensus disorder prediction 986 1008 - -
Mal8g3710 1119 Pfam Pleckstrin homology domain 17 124 IPR001849 -
Mal8g3710 1119 Coils Coil 877 897 - -
Mal8g3710 1119 Pfam FYVE zinc finger 622 688 IPR000306 GO:0046872
Mal8g3710 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 466 517 IPR000408 -
Mal8g3710 1119 MobiDBLite consensus disorder prediction 145 228 - -
Mal8g3710 1119 PRINTS Chromosome condensation regulator RCC1 signature 507 525 IPR000408 -
Mal8g3710 1119 PRINTS Chromosome condensation regulator RCC1 signature 405 419 IPR000408 -
Mal8g3710 1119 PRINTS Chromosome condensation regulator RCC1 signature 565 586 IPR000408 -
Mal8g3710 1119 PRINTS Chromosome condensation regulator RCC1 signature 298 314 IPR000408 -
Mal8g3710 1119 PRINTS Chromosome condensation regulator RCC1 signature 348 364 IPR000408 -
Mal8g3710 1119 PRINTS Chromosome condensation regulator RCC1 signature 389 405 IPR000408 -
Mal8g3710 1119 MobiDBLite consensus disorder prediction 704 718 - -
Mal8g3710 1119 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 16 1100 - -
Mal8g3710 1119 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 389 399 IPR000408 -
Mal8g3710 1119 Coils Coil 821 862 - -
Mal8g3710 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 518 569 IPR000408 -
Mal8g3710 1119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 634 695 IPR013083 -
Mal8g3710 1119 SUPERFAMILY FYVE/PHD zinc finger 622 696 IPR011011 -
Mal8g3710 1119 Pfam Transcription factor BRX N-terminal domain 872 907 IPR027988 -
Mal8g3710 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 570 621 IPR000408 -
Mal8g3710 1119 MobiDBLite consensus disorder prediction 986 1021 - -
Mal8g3710 1119 MobiDBLite consensus disorder prediction 779 816 - -
Mal8g3710 1119 SMART fyve_4 620 689 IPR000306 GO:0046872
Mal8g3710 1119 SUPERFAMILY PH domain-like 15 124 - -
Mal8g3710 1119 CDD PH_PLC_plant-like 13 125 - -
Mal8g3710 1119 Gene3D - 14 130 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3710 Mal-Chr8 107214132 107223504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3710 1040 1110 Major Intrinsic Protein MIP AT1G31880 45.070 3.10e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3710 - - gmx:100805364 1805.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g3710 8 107214132 107223504 Mal1g2141 1 28099981 28109971 PCT