Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3667 ATGAAGGAGAAAAAGATCAACAACCGCCGCGAAAAGCGTCAAACAAAGCACGCCAAGAAGCAAAAAAGATTGGAGAACCAAGAATCAACACGGCAAGCCTCTTGTTGCTTCACATGCAAGTCATGCAACAAAGACAGTGAAGACAACACCGTTTCTGTTATGGTTTCCAACCCTAAAGTGCTTGATTTCTGCAATTGTTATGAACCCTTAAGTATTCCAGTCTTTAAGTGTGATAGTGGTCATATTGTTTGCTCTACATGTTGCATGGAGAAAATAAGTTACATTGGAAAGAGGAAGCATGAACAAGAATGCATCCATCAGAAATGTTACTGCCCTCCATTTGGTTCTTCAGAACCTCTCAAGCAAGATATTTGCATAACCCCCATGATGCAAATCTTCGTAAAGGGCATGGATGGGAAGACGTTCACCCTGAGTGTTAAGAGCTCAGACACGATAATCGATGTGAAAGAGAAGATTTTTGATAGGGATGAGATTGCGGTGCACGACCAACGTCTGATCTATAGTGGTGCCCAACTAGATGACAACTTAACCCTTGCCAATTGTAATATCCAAGATTCCTCAACCCTCCACCTTGTCCTCCGCGTCCTTGGGGACTAG 618 0.4304 MKEKKINNRREKRQTKHAKKQKRLENQESTRQASCCFTCKSCNKDSEDNTVSVMVSNPKVLDFCNCYEPLSIPVFKCDSGHIVCSTCCMEKISYIGKRKHEQECIHQKCYCPPFGSSEPLKQDICITPMMQIFVKGMDGKTFTLSVKSSDTIIDVKEKIFDRDEIAVHDQRLIYSGAQLDDNLTLANCNIQDSSTLHLVLRVLGD* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3667 205 SUPERFAMILY Ubiquitin-like 115 204 IPR029071 -
Mal8g3667 205 PRINTS Ubiquitin signature 140 160 IPR019956 -
Mal8g3667 205 PRINTS Ubiquitin signature 182 203 IPR019956 -
Mal8g3667 205 PRINTS Ubiquitin signature 161 181 IPR019956 -
Mal8g3667 205 MobiDBLite consensus disorder prediction 1 26 - -
Mal8g3667 205 ProSiteProfiles Ubiquitin domain profile. 130 205 IPR000626 GO:0005515
Mal8g3667 205 PANTHER - 102 204 - -
Mal8g3667 205 PANTHER UBIQUITIN 102 204 - -
Mal8g3667 205 Gene3D - 126 205 - -
Mal8g3667 205 SMART ubq_7 130 201 IPR000626 GO:0005515
Mal8g3667 205 Pfam Ubiquitin family 132 201 IPR000626 GO:0005515
Mal8g3667 205 ProSitePatterns Ubiquitin domain signature. 156 181 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3667 Mal-Chr8 106314073 106316666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3667 130 204 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 61.333 1.19e-23 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3667 - K08770 ppp:112289942 90.5077