Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3481 ATGTCCTTGTTAACGGTGGCGCATCAAAGAGGTTCAGGTGAGTTCACCAAATTCACGGTGAAGCGCGACGGCGATGATCACGACGATGGTGGAAATTCTAGTGCATCACAATCATTAGATTTCAACCAAATGCATGGTGATAGAGAGTTCACAGAAATGGTTTCAGCTCTTACACATGTTGCATCATCAGGGTCTAATCAAATGAGTAGTAATGAATGGATTCAAAGAAGTGGTTTTCCTTTGATATCAAGTTTTGGAAATGCTTCATCTTCTTCTTCTTCTTATTCTTCAAGTTCTTCTAGCTTTGTTTTACCCTCTGGATCATCATGGAGTGGTCAAAAAAGAGGGCGTGATGAAGAAAGTAGTGGTTCTAATCAAATTTTACAACAATCTATTCCTAGACTCTTTAGAACTGTTATGGTACCTTCTCAAGGACAAGGAGAATCATTATCATCATCATCATCAGTGACTGAAGAAGCTCGCACAAATACTACCATAGCCACCTCCTCCTCAGCGTCGGCCGCATCATTGGAAGAGTCCGGCGAGCAGAGGAGAAGATACAGAGGAGTAAGACAGAGACCATGGGGAAAATGGGCAGCAGAGATACGAGATCCACACAAAGCACAAAGAGTATGGCTTGGAACATTTGATACAGCAGAATCTGCAGCAAGAGCATATGATGAAGCTGCATTGAGATTCAGAGGAAGCAGAGCAAAACTCAACTTCCCTGAAAATGTTAGATCAATTATGCCGCCACCGCCACCGCAGCCACAATCACTATCACAGCTTCAATCTTTTCCGGCTGCCGCGGTTCCCTCTCGAACGCCGCAGCCGCCGGTTCAAGGAGCCTCTGATTTGAGAGACTATTTGGAATATTCTCATATTCTTCAAAGTTCTGGTGACTTTCAACTACAACAAATGCAGCAACAACAACAACAACAATTACAAGCTTCTAATTTGGTTCAACAATGGTATTATAATGCACAATTGGCAGCACTTCAATCACATTCATTGTTATCTTCATCATCATCGCTCTCTATGCCTTCTAATATGTTACCATCAACACCTTCATTTTCACCCTCCACTCAACTTTCATCCACCTCTGCTTCATTTCCCCTGTTTTCTAGTCAACAAATGGGATTTTTCCGGCCGCCAGAAAACCGCCCGCCTAGTGGTGGTCATGGCGGCGGAACAGAGTTTCCGCCGTCAACATGGTCAAATACTGATGGCCATCCACCACCACCTTATGGTTGA 1254 0.4378 MSLLTVAHQRGSGEFTKFTVKRDGDDHDDGGNSSASQSLDFNQMHGDREFTEMVSALTHVASSGSNQMSSNEWIQRSGFPLISSFGNASSSSSSYSSSSSSFVLPSGSSWSGQKRGRDEESSGSNQILQQSIPRLFRTVMVPSQGQGESLSSSSSVTEEARTNTTIATSSSASAASLEESGEQRRRYRGVRQRPWGKWAAEIRDPHKAQRVWLGTFDTAESAARAYDEAALRFRGSRAKLNFPENVRSIMPPPPPQPQSLSQLQSFPAAAVPSRTPQPPVQGASDLRDYLEYSHILQSSGDFQLQQMQQQQQQQLQASNLVQQWYYNAQLAALQSHSLLSSSSSLSMPSNMLPSTPSFSPSTQLSSTSASFPLFSSQQMGFFRPPENRPPSGGHGGGTEFPPSTWSNTDGHPPPPYG* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3481 417 PRINTS Ethylene responsive element binding protein signature 187 198 IPR001471 GO:0003700|GO:0006355
Mal8g3481 417 PRINTS Ethylene responsive element binding protein signature 209 225 IPR001471 GO:0003700|GO:0006355
Mal8g3481 417 ProSiteProfiles AP2/ERF domain profile. 186 243 IPR001471 GO:0003700|GO:0006355
Mal8g3481 417 MobiDBLite consensus disorder prediction 143 178 - -
Mal8g3481 417 Gene3D AP2/ERF domain 185 245 IPR036955 GO:0003700|GO:0006355
Mal8g3481 417 SMART rav1_2 186 249 IPR001471 GO:0003700|GO:0006355
Mal8g3481 417 CDD AP2 194 245 IPR001471 GO:0003700|GO:0006355
Mal8g3481 417 MobiDBLite consensus disorder prediction 342 417 - -
Mal8g3481 417 MobiDBLite consensus disorder prediction 250 281 - -
Mal8g3481 417 MobiDBLite consensus disorder prediction 14 45 - -
Mal8g3481 417 SUPERFAMILY DNA-binding domain 186 244 IPR016177 GO:0003677
Mal8g3481 417 MobiDBLite consensus disorder prediction 143 189 - -
Mal8g3481 417 MobiDBLite consensus disorder prediction 342 382 - -
Mal8g3481 417 MobiDBLite consensus disorder prediction 15 30 - -
Mal8g3481 417 MobiDBLite consensus disorder prediction 95 112 - -
Mal8g3481 417 Pfam AP2 domain 186 235 IPR001471 GO:0003700|GO:0006355
Mal8g3481 417 PANTHER DNA-BINDING DOMAIN 45 383 IPR044808 GO:0003700|GO:0009873
Mal8g3481 417 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 45 383 - -
Mal8g3481 417 MobiDBLite consensus disorder prediction 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3481 Mal-Chr8 98871279 98873257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3481 174 247 AP2-EREBP Transcription Factor Family AT5G61890 76.000 5.13e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal8g3481 AP2 4.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3481 - - mtr:MTR_6g037610 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g3481 8 98871279 98873257 Mal1g2177 1 28736458 28738344 PCT