Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3439 ATGGTGTTGATTGATGAAGAGATCAATGCTAACACCAAATTCACTGAGGAGGACTATGATGATGGCAAGATCCCTCTCCATGTTTTTGAATTTGTAAGTTATGAACATTTGGAGGCTCGAATTGGCAAAGATGTGTATACAGATATAATTGGAGTTATAGTTGATGTCAATCCAATTGAGCAGAGGAGAACTGCTAATGGTATAGTGGATATTATGTCAGTTCAGCTAAAAGATATAAGTGGAAACGCATTCAACGTCACATTGTGGGATAAATATGCTACAATCTTTGATAAGACACTAAAAAGGTCTCTGCATGACGCTCGTACCTCAAATCCAAATGTTGCAGTTATCACATCCGCTATAGTCAAGACATTTCAAGGTGATGTATGTTTTAACTCATCAAGTGCAACAAAGATTTATATCAATATAGACATCCCGGAAGCAACTCAACTCATTGAGTCATTCAAGAGTACCAATGATTTACCATCATCCGAAAATGCGGGTCTCGCAGGTTCTGCTGTCCTTTACAAACTAGACAAGACAAGGACTATATCTGAAATTTTAAGTTTGGCAAGATCAGGGAATAAGGTGGATGTTGTGGTTAACTGTATTGCAACTGTGACGGAGGTTTTGGATAAAAATGGATGGTGTTACGTTGGATGCCCTAAGTGTAGAAAGGGTGCTTCTTCCACTGAAACACATTTTAAATGTACTGGTTGTAATGAAGATGTGGAATATCCCGTGACAAGGTATCGTTTGGAAGTTGGCGTCAAAGACTCTGCAGATTCTACTATATTTGTATTGTTTGATGAAGTTGCTGAACAAGTGTCCCAATTGAAATTGACTGATCTAACCTCAATTTTAGAAAATATAAGTGAAACTGAAGACAGACCAATAATACCTCAGCAGCTCCAAAAGATCATTGGGTCCACATATATATTCCAAATTAAGATGAGGACTTACTTTCAAAGTGGTGGAAGAGAAAGTTTCACAGTGAGCAGAATTGTGGAACCGAAAGTGAAGGTTGAGGAAGATGACAAGACTGACAATGTATGTAATGCATCGGGTAGTTCTCCAAAAATAAAGACACCAATTTTGCCACAAAAGAGGAGAAGGTTAAGGTTGCAGTTTGAAAATGAGTCGGATGGTGTGGAGGAAAAAGAGATTGGATCAAATTTGGGAGCTGATGAGGACCATAAGGAAATGGTTGATCAGGAAGTGGTGGATGTCTTAGACGACTGA 1242 0.3857 MVLIDEEINANTKFTEEDYDDGKIPLHVFEFVSYEHLEARIGKDVYTDIIGVIVDVNPIEQRRTANGIVDIMSVQLKDISGNAFNVTLWDKYATIFDKTLKRSLHDARTSNPNVAVITSAIVKTFQGDVCFNSSSATKIYINIDIPEATQLIESFKSTNDLPSSENAGLAGSAVLYKLDKTRTISEILSLARSGNKVDVVVNCIATVTEVLDKNGWCYVGCPKCRKGASSTETHFKCTGCNEDVEYPVTRYRLEVGVKDSADSTIFVLFDEVAEQVSQLKLTDLTSILENISETEDRPIIPQQLQKIIGSTYIFQIKMRTYFQSGGRESFTVSRIVEPKVKVEEDDKTDNVCNASGSSPKIKTPILPQKRRRLRLQFENESDGVEEKEIGSNLGADEDHKEMVDQEVVDVLDD* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3439 413 CDD RPA1_DBD_C 184 335 IPR013955 -
Mal8g3439 413 PANTHER REPLICATION FACTOR A 1, RFA1 8 361 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal8g3439 413 MobiDBLite consensus disorder prediction 377 406 - -
Mal8g3439 413 CDD RPA1_DBD_B_like 48 157 - -
Mal8g3439 413 Gene3D - 23 162 IPR012340 -
Mal8g3439 413 Gene3D - 168 351 IPR012340 -
Mal8g3439 413 Pfam Replication protein A OB domain 42 130 IPR031657 -
Mal8g3439 413 PANTHER BNAC01G35430D PROTEIN 8 361 - -
Mal8g3439 413 SUPERFAMILY Nucleic acid-binding proteins 30 157 IPR012340 -
Mal8g3439 413 SUPERFAMILY Nucleic acid-binding proteins 181 343 IPR012340 -
Mal8g3439 413 MobiDBLite consensus disorder prediction 377 413 - -
Mal8g3439 413 Pfam Replication factor-A C terminal domain 203 343 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3439 Mal-Chr8 96311054 96313365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3439 20 368 Core DNA Replication Machinery Family AT4G19130 23.770 1.31e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3439 - - mtr:MTR_4g070090 330.487