Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3364 ATGGCAGCAGTAATTTCATCACCGAAGATGGCGGTTCCCGTGGCTTTGAACGGCACTGGACGATTTGAGAATGCTTCCTTGTACGTTGGTGATCTTGAAGGGAATGTGAATGAGACGCAGCTTTATAATTTGTTCAGTCAGATTGCCCAGGTTGTTTCCATTAGGGTTTGTAGGGATCAGACTATGCGGTCGTCTCTTGGTTATGCTTATGTAAACTTCTCCAACTCTCGTGATGCTGCTAATGCGATGGAAAATTTAAACTACATTACTCTGAATGGGAAGCCTATTCGTATTATGTTTTCTCACCGAGATCCAAGCATTCGGAGAACTGGCTTTGCAAATGTGTTCATTAAGAACTTAGACACATCAATAGATAATAAGGCGTTGCATGATACATTTGCTGCCTTTGGAACTGTACTTTCTTGTAAGGTAGCTCTAACTAGCAATGGACAATCTAGGGGATATGGTTTTGTACAATATGATAATGATGAGTCTGCACGGAATGCAATTGAAAAATTGGATGGCATGTTGATAAATAATAAGAAAGTTTATGTGGGTTATTTTATTCGCCGTCAAGAAAGGTCAGGAAATGGATCACCTACATTCACTAATGTGTATGTGAAAAACCTTTCTGAAACAGATACTGATGAGGACCTTAAGCAGCTTTTCAGCACTTATGGTGTAATAACGAGTGCAGTGATCATGAAAGATGATAACAGTAACTCTAAATGTTTTGGTTTTGTGAATTTCGAAAGCCCAGATTCAGCAGCTGCTGCAATTGAGAAGTTGAATGGGACCGCAACCAATGATGGGAAGTTTTTATTTGTCGGAAGGGCTCAGAGAAAATCGGAAAGGGAGGCAGAGTTAAAAGCTAAATTTGAGGTAGAAAAGATGAAAAGGTATGAGAAATTACAAGGTGCTAATTTATATCTGAAAAACCTTGATGACAGTCTTAATGATGAAAAATTGAAGGAGTTGTTTTCTGAGTTTGGAACAATGACTTCATGCAAGGTAATGTTTGATGTTCATGGCCAAAGCAAGGGCTTCGGTTTTGTTGCATTTTCAAATCCTGAGGAAGCAAGTAAAGCTATAAATGCAATGAATGGAAAGATAATTGGACAAAAGCCCTTATATGTTGCTGTAGCCCAGCGCAAAGAAGAAAGGAAAGCTCGTTTGCAGGCTCAATTTTCTCAAATCCAAGCACCGGGTGGAATCACACCATTTCCCGCAAGAATTACTGGATATCATCCAACTGCGCCAAGACTTGCTCCTCAACAGTTGTATTATGGGCAAGGTACACCTGGTCTCATTCCACATCAACCAAACGGATATGGTTTTCAGCAACCGTTCATGCCAGGTTTGCGAGGTGTTGCTCCAAATTACATCATGCCATACAACCTTCAAAGGCAAGGACATTATGGGCATAGGTCCGGTGTGCGTCCAGTTAGTAACTTCCAACAGGTGCAGCAGAACCAAATGCTACCTCGTAACTCCAACCAAGGGTTTAAATACAATGGTCAAAATGGCATGGATCCGTCTGTAGATCGCGAAGGTCACACGAGTCAAGTGGTGGATTCATCTGCAATTGCTGCAACCCCAATTGACAATCACCGTCATGGAGCATTGTCTAACAACTCACTTGCTTCAACTTTGGCTTCTGCTACCAGAGAAAATCAACATCGGATGCTGGGAGAACATTTATATCCTCTAGTGGGTCGTCTTACGCCAAACAATCAGACAGCAAAGGTGACAGGAATGTTGTTGGAAATGGACCAAGCAGAGGTTATCCATCTGATTGAGTCTCCCGAAGAATTGAAGATAAAGGTGTCTGAGGCAATGCAAGTCCTTCGTGAAGCCTCACCGGGTCCTGCAGTTGTTGATTAG 1884 0.4188 MAAVISSPKMAVPVALNGTGRFENASLYVGDLEGNVNETQLYNLFSQIAQVVSIRVCRDQTMRSSLGYAYVNFSNSRDAANAMENLNYITLNGKPIRIMFSHRDPSIRRTGFANVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALTSNGQSRGYGFVQYDNDESARNAIEKLDGMLINNKKVYVGYFIRRQERSGNGSPTFTNVYVKNLSETDTDEDLKQLFSTYGVITSAVIMKDDNSNSKCFGFVNFESPDSAAAAIEKLNGTATNDGKFLFVGRAQRKSEREAELKAKFEVEKMKRYEKLQGANLYLKNLDDSLNDEKLKELFSEFGTMTSCKVMFDVHGQSKGFGFVAFSNPEEASKAINAMNGKIIGQKPLYVAVAQRKEERKARLQAQFSQIQAPGGITPFPARITGYHPTAPRLAPQQLYYGQGTPGLIPHQPNGYGFQQPFMPGLRGVAPNYIMPYNLQRQGHYGHRSGVRPVSNFQQVQQNQMLPRNSNQGFKYNGQNGMDPSVDREGHTSQVVDSSAIAATPIDNHRHGALSNNSLASTLASATRENQHRMLGEHLYPLVGRLTPNNQTAKVTGMLLEMDQAEVIHLIESPEELKIKVSEAMQVLREASPGPAVVD* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3364 627 SUPERFAMILY RNA-binding domain, RBD 24 193 IPR035979 GO:0003676
Mal8g3364 627 CDD RRM1_I_PABPs 26 105 - -
Mal8g3364 627 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 281 IPR000504 GO:0003723
Mal8g3364 627 Gene3D - 289 393 IPR012677 -
Mal8g3364 627 SMART poly_2 555 619 IPR002004 GO:0003723
Mal8g3364 627 SUPERFAMILY RNA-binding domain, RBD 200 287 IPR035979 GO:0003676
Mal8g3364 627 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 269 IPR000504 GO:0003723
Mal8g3364 627 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 377 IPR000504 GO:0003723
Mal8g3364 627 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 97 IPR000504 GO:0003723
Mal8g3364 627 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 183 IPR000504 GO:0003723
Mal8g3364 627 Gene3D - 541 620 - -
Mal8g3364 627 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 543 621 IPR002004 GO:0003723
Mal8g3364 627 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Mal8g3364 627 SUPERFAMILY RNA-binding domain, RBD 304 397 IPR035979 GO:0003676
Mal8g3364 627 SMART rrm1_1 114 186 IPR000504 GO:0003723
Mal8g3364 627 SMART rrm1_1 204 277 IPR000504 GO:0003723
Mal8g3364 627 SMART rrm1_1 26 99 IPR000504 GO:0003723
Mal8g3364 627 SMART rrm1_1 308 380 IPR000504 GO:0003723
Mal8g3364 627 SUPERFAMILY PABC (PABP) domain 459 619 IPR036053 GO:0003723
Mal8g3364 627 CDD RRM3_I_PABPs 202 282 - -
Mal8g3364 627 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 25 617 IPR006515 GO:0003723
Mal8g3364 627 Gene3D - 113 187 IPR012677 -
Mal8g3364 627 Gene3D - 20 112 IPR012677 -
Mal8g3364 627 Pfam Poly-adenylate binding protein, unique domain 551 616 IPR002004 GO:0003723
Mal8g3364 627 PANTHER POLYADENYLATE-BINDING PROTEIN 18 621 - -
Mal8g3364 627 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Mal8g3364 627 CDD RRM4_I_PABPs 306 384 - -
Mal8g3364 627 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 384 IPR000504 GO:0003723
Mal8g3364 627 CDD RRM2_I_PABPs 111 187 IPR045305 -
Mal8g3364 627 SMART rrm2_1 26 99 IPR003954 GO:0003676
Mal8g3364 627 SMART rrm2_1 204 276 IPR003954 GO:0003676
Mal8g3364 627 SMART rrm2_1 308 380 IPR003954 GO:0003676
Mal8g3364 627 SMART rrm2_1 114 186 IPR003954 GO:0003676
Mal8g3364 627 Gene3D - 191 288 IPR012677 -
Mal8g3364 627 PANTHER RNA BINDING PROTEIN 18 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3364 Mal-Chr8 94433986 94438928 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3364 24 626 Eukaryotic Initiation Factors Gene Family AT1G71770 55.592 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3364 K13126 - gmx:100783163 895.96