Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3363 ATGAAAAGAAGAATCAAAGAGCTTCTAAGGCTCTCTTATTCATCTCTACACTCTCAAATTCATCACCAACCACTCTCAAAACCAATACCAACCATTTCTTCTTTTCAACCTTCTACAACTTTCTCAACATTTTCCAAGTCTCAGAGAGATTCACTGATTCTCCAACAGTTCAAAGAAAGAAAACTCAAAGGGTCATCAAAAGACTCAAAAGATGATCCAAAAGTTTCAAATTCAAGTTTTGATGCTAATGATGAGAAAATGGTCCAAAAGGGTTTGAAGAATGATGCTATGGTTGTTGGTAACTTTAAGGAGTTGGGTGTGAGTGATGTGCTTGTTGAGGTTATGGAAGATATTGGTGAGTTTGTTCCAAGTGAGATACAGTGTGTTGTTATTCCAACTATTTTGGATGGGAAGAGTTTGTTGTTGAGTTCACCTTCTCAGCCTGATAGGACCTTGGCTTACTTGTTGCCCCTTATTCAGATGCTGAGACGAGATAGAGAGTTGCTTGGTTCGAATTCAAAGCATCCTCCAGCCATTGTGCTTTGTGCTTCAGAGGAGAAAGCTGAACAGTGCTTTAATGCTGCAAGATATATCATCCATAATGCAGAATTGAAGTCTGCAAAGAATTCTGCTTCATCAGATAACGAAAAGTCAAATTCCTCAATTGGCTTAATGATTGGAACTCCTTGTGAGATTCTTCAATACATTGAAGAGGGAACTGTTGTTCCTGCTGAATTAAAATACTTGGTATTGGACGAAGCAGATTCCATGCTTGGTAGCAACCTTGGTCCTGAAATTACTAAAATTATCAGGCCATTACAACATCATGAGTCAAAATCCAGTGTCAAGAGATTGCAAACGATTATGGTAATTTCAACTATAGCTGAGGTTTTGGGTGAAAATTTGCCGATTGTGAAACGACTTGAGCGTGATCATGCCGGAAATATTTCTGCATTGTCTATAGAAATGGAGGAAACAGAAGTTTTTCATTTGACAGAGTCTCTGGATGCTCTTAAGGAAAAATTGGAAGAGGCCATGAATTCCCTTTAG 1050 0.3838 MKRRIKELLRLSYSSLHSQIHHQPLSKPIPTISSFQPSTTFSTFSKSQRDSLILQQFKERKLKGSSKDSKDDPKVSNSSFDANDEKMVQKGLKNDAMVVGNFKELGVSDVLVEVMEDIGEFVPSEIQCVVIPTILDGKSLLLSSPSQPDRTLAYLLPLIQMLRRDRELLGSNSKHPPAIVLCASEEKAEQCFNAARYIIHNAELKSAKNSASSDNEKSNSSIGLMIGTPCEILQYIEEGTVVPAELKYLVLDEADSMLGSNLGPEITKIIRPLQHHESKSSVKRLQTIMVISTIAEVLGENLPIVKRLERDHAGNISALSIEMEETEVFHLTESLDALKEKLEEAMNSL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3363 349 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 238 349 IPR002004 GO:0003723
Mal8g3363 349 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 131 312 IPR014001 -
Mal8g3363 349 Gene3D - 301 349 - -
Mal8g3363 349 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 24 349 - -
Mal8g3363 349 Coils Coil 321 348 - -
Mal8g3363 349 Gene3D - 52 300 IPR027417 -
Mal8g3363 349 Pfam Poly-adenylate binding protein, unique domain 296 347 IPR002004 GO:0003723
Mal8g3363 349 MobiDBLite consensus disorder prediction 61 83 - -
Mal8g3363 349 MobiDBLite consensus disorder prediction 61 79 - -
Mal8g3363 349 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 295 IPR027417 -
Mal8g3363 349 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 24 349 - -
Mal8g3363 349 SUPERFAMILY PABC (PABP) domain 296 347 IPR036053 GO:0003723
Mal8g3363 349 Pfam DEAD/DEAH box helicase 125 292 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3363 Mal-Chr8 94424191 94427421 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3363 275 349 Eukaryotic Initiation Factors Gene Family AT1G49760 35.714 2.07e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3363 - - vra:106768009 429.098