Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3346 ATGGCGGTTGCTACCAGAAAAACCCTCTTCACTCTCTCTTCCTCCATCACCTTCACTTCCCGCTTCTCTCTCCTCAAACTCTCACCATACCAATCAACCCATTTTCCAAAACGCTTCAGACCACTTTCTTCTCTCACCACCGCACCAGAATCATCACCATCATTTCTCGATTTCGATACCGAAAAAAACACGGTTCTTCTTGAGAAGTTAAGAGTAAGACACTTGAAAGGTAGTAAGAATCATGAAATTGTGGTGAGGAAGAGTGAGGGGGTGAAGAAGAAGGAGGTGGTTGTTGAGGGTGGTGGTGGTGTTGGGAGTTTTGAGGAATTGGGAATTGGGGATGAGGTTATGGGGGCTGTTAGAGAAATGGGTATTGAAGTTCCTACTGAGATTCAGTGTATTGGTGTTCCTAATGTTTTGGAGGGGAAAAGTGTTGTTTTAGGGTCTCATACTGGGTCTGGAAAGACACTTGCTTATTTGTTACCACTTGTTCAGTTGCTAAGGCGAGATGAGCAATTGAATGGAATAGTGTTGAAGCCCAAGCGTCCCCGAGCTGTTGTGTTATGCCCTACGAGGGAGTTGTCTGAGCAGGTTTTTCGAGTTGCAAAATTGATAAGCCATCATGCACGATTCAGGTGTACCATGGTAAGTGGTGGTGGCCGTCTTAGGCCTCAAGAGGAGTCACTTAGTAACCCCATTGATATGGTAGTTGGTACCCCTGGCAGGATTCTTCAACATATCGAGGAAGGAAATATGGTATACGGTGACATCCAATACGTGGTATTAGATGAGGCAGACACGATGTTTGATCGGGGCTTTGGTCCTGATATTCGCAAATTCCTGGCCCCATTAAAACATCGCGCTTCAAAACCTGACAGCCTAGGTTTCCAGACTGTTTTGGTCACTGCAACCATGACAAAGGCTGTGCAAAATCTGGTTGATGAGGAGTTTCAAGGCATTGTACATCTGCGCACGTCATCGTTACATAAAAAGATTTCTAATGCTCGTCATGATTTTATCAAACTTTCTGGTACTGAGAACAAGCTGGATTCATTACTTCAGGTATTAGAGCCAAGTCTTGCAAAGGGTAACAGGGTAATGGTGTTCTGCAACACATTGAATTCTAGCCGTGCTGTGGATCACTTTCTTGGAGAAAATCAGATATCTACCGTGAATTACCATGGGGAGGTACCGGCGGGGCAAAGGGTTGAAAACCTCAACAAGTTTAAGAGTAACAGTGACGATTGCCCTACATTGGTTTGCACGGATTTGGCTGCTAGGGGTCTAGACTTGGATGTAGATCATGTTATCATGTTCGACTTCCCTTTGAATTCGATTGACTACCTCCATCGCACAGGTAGAACTGCTCGTATGGGTGCAAAAGGTAAAATAACAAGTTTGGTTACTAAAAAGGACTACAGCTTGGCAACCAAAATAGAGGAGGCAATAAGAAAGAACGAGAATTTGGAGGCTATCACTAAAGAAAGTGTCCGAATGGATGTAACCAGGAACCAAATCACTGAGCAGAGAAGAAAGAACAAAAATGTGGTTAAACCTTCGAAAGTTAGGAACAAATCTGATTCTCGCACCAGTTCTGTGAATACCAGGTCAGGTATTAGGGACAAATCTGATTCTCGCACCAATTCTACGAATACCAGGTCAGGTATTAGGGACAAAACTGATTCTCGCACCAGATCTGCGAATACCAGGTCAGGTATTAGGGACAAAACTGATTCTCGCGGCAGATCTGTGAATACCAGGTCAGGTAGTAGGGACAAATCTGATTCTCGTACCAGTTCTGTTAAACAATCAGCACCATCAAAGTTTACGAAGAAAGGGTTTACCGTTTCGAAATCTGTAAAATCTTCCAGTACAGGTAGCTTCAAAAAAGCTTCTTCAGATAATAAGCGAACGGGTAAAAGGACCACTGCCACCAAATCTACACATTCTAAACTTAGTGTTATCGGGTTTAGGGGGCGGAATGCATCATCCTCAGATAAGAGACAAACATTTTAG 2016 0.4375 MAVATRKTLFTLSSSITFTSRFSLLKLSPYQSTHFPKRFRPLSSLTTAPESSPSFLDFDTEKNTVLLEKLRVRHLKGSKNHEIVVRKSEGVKKKEVVVEGGGGVGSFEELGIGDEVMGAVREMGIEVPTEIQCIGVPNVLEGKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGIVLKPKRPRAVVLCPTRELSEQVFRVAKLISHHARFRCTMVSGGGRLRPQEESLSNPIDMVVGTPGRILQHIEEGNMVYGDIQYVVLDEADTMFDRGFGPDIRKFLAPLKHRASKPDSLGFQTVLVTATMTKAVQNLVDEEFQGIVHLRTSSLHKKISNARHDFIKLSGTENKLDSLLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAGQRVENLNKFKSNSDDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKITSLVTKKDYSLATKIEEAIRKNENLEAITKESVRMDVTRNQITEQRRKNKNVVKPSKVRNKSDSRTSSVNTRSGIRDKSDSRTNSTNTRSGIRDKTDSRTRSANTRSGIRDKTDSRGRSVNTRSGSRDKSDSRTSSVKQSAPSKFTKKGFTVSKSVKSSSTGSFKKASSDNKRTGKRTTATKSTHSKLSVIGFRGRNASSSDKRQTF* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3346 671 MobiDBLite consensus disorder prediction 599 632 - -
Mal8g3346 671 Gene3D - 330 566 IPR027417 -
Mal8g3346 671 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 136 323 IPR014001 -
Mal8g3346 671 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 26 535 - -
Mal8g3346 671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 479 IPR027417 -
Mal8g3346 671 Pfam Helicase conserved C-terminal domain 348 459 IPR001650 -
Mal8g3346 671 Pfam DEAD/DEAH box helicase 129 312 IPR011545 GO:0003676|GO:0005524
Mal8g3346 671 Gene3D - 71 324 IPR027417 -
Mal8g3346 671 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 348 500 IPR001650 -
Mal8g3346 671 MobiDBLite consensus disorder prediction 504 525 - -
Mal8g3346 671 MobiDBLite consensus disorder prediction 645 671 - -
Mal8g3346 671 MobiDBLite consensus disorder prediction 503 671 - -
Mal8g3346 671 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 105 133 IPR014014 GO:0003724
Mal8g3346 671 MobiDBLite consensus disorder prediction 556 598 - -
Mal8g3346 671 CDD SF2_C_DEAD 336 468 - -
Mal8g3346 671 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 26 535 - -
Mal8g3346 671 CDD DEADc 116 315 - -
Mal8g3346 671 SMART helicmild6 377 459 IPR001650 -
Mal8g3346 671 SMART ultradead3 124 333 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3346 Mal-Chr8 94000321 94006836 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3346 99 481 Eukaryotic Initiation Factors Gene Family AT3G19760 28.165 3.92e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3346 - - mtr:MTR_6g039840 1072.38