Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3217 ATGGCAAGGCCATTTGATTTCATCAATGATATCACAGACAAAACAGATTTTTGGAAACTTGCAGTCAAAGTGAAAGATAAGTGGAATGTAAGGGTTAAAGACAAAGAACATTATGAGATGGTGATTATAGATGCTAAGGGAAATGATATTCAAGTGATAATTCCAACTGCTTTCAAAACTGAATATGAAAAAATGGTTGAAAATAAGAGTTACACTTTAACTAATTTTCAAGTCTTGAAAAATGACATAATGTTCAAAGCATGTAATCATAAGTACAAATTAATATGGACTGGTGGAACAAGTGTTGAAGAGGATACAAATCATCAGATTCCTGAAGTTGTCATCAAATTCAAACCATTTTCTGACATTGTGGCTGGGAAGTGGCAGCCCGATCTTTTAGTTGATGTCATTGGTGCTGTATTTGAAATGGGATACCAACAACTTGAGAAAGGCTCGAAACCGCTTCAAGTTAATTTCTTATTGACAGATTTGAGTAATCAAACAATCAACTGCACATTGTGGGACGATTATTCTGTGAGGTTTAACAAATTCATCCAGGAAAGGAAAGACACTGGACCAATTGTAGTTATGTTGAAATATGCTAAAATCAAAGAGGAAGGCAAATTCCCTCTTAGTGTTTCAAACACTTATAATCTGACAAAGCTTTATATCAATGAGGATGTCCCTGAAATTACCAACTTCATGAAATTGCTACCTCAAAATCAACTGATTGACCCTATGAACCAAATAGTTTGTACTCAATCTTCTCAAGCTTTGAGTCAATCTTCAAGAAGTTCACAATTTTCAAATCCTGACAATTTCATGAGAAATTCACTGCTGTTGCCTCTTGGTGATATAATTCAACTTCCTAAGGAATCTTATTGTGTCACTGTTGCTGATACTGTGAAAGTGAAGTCTACAAAACATGGTTGGTACTACCAAGCTTGCTGTAAATGCCCGAAAATAGCTAAGGGGGACAACCCTCCTTATGTATGCGATAAAGACCATGAGACTGAGACTCAAATTTACAGGTACAAGCTAGAAGTTGAGGTTTCCTACGAAGATGCTAAAGCTACTTTTGTTTTCTGGGATCGTGAAGTTACGCAACTGCTGGGAATTACAGCTGCTCAACTAAGGGCTAACATGATCAAGGCTGGCGTCAAAAACCCATTAGAGTATCCACAGATAATTGAAACCATAAGTGAAAAAACCATGGTATTCAAGGTGAAATGGCAACCATATTGGAAAAACTGTTCTGTCATATGCATTAAAGAGGGAAAGCCTATAGTTGATATGATCAAGAGTAAATTTCCAAACCAAATGGTTAAGAACGAAGCTACAAATGATATTGAAATTGAGTCCATTCAATTAGTTGAAACATCTGTCACTTCTGAAAACAACCCTGAAGGTCTTTCCCAGTTAACTCCTACTAAGGGATTTGGTGATCTTCTCAAAGTGAATGACATTATGCAACTTGATGGAACTCCGTCTTCTAAGCTTCATGAGCACATTGAAATTGAAACAACTCCTTCTTCCAAACCTCCTCTCACAAGGATTGCATCAAGCAAGGCTTATCAGGCTCAAATCAATGCTGCAAAGAGTTCGTCATCAAAGAAAATGAAATTGGTGAAAACTGAAAAGAAAGATTGA 1650 0.3642 MARPFDFINDITDKTDFWKLAVKVKDKWNVRVKDKEHYEMVIIDAKGNDIQVIIPTAFKTEYEKMVENKSYTLTNFQVLKNDIMFKACNHKYKLIWTGGTSVEEDTNHQIPEVVIKFKPFSDIVAGKWQPDLLVDVIGAVFEMGYQQLEKGSKPLQVNFLLTDLSNQTINCTLWDDYSVRFNKFIQERKDTGPIVVMLKYAKIKEEGKFPLSVSNTYNLTKLYINEDVPEITNFMKLLPQNQLIDPMNQIVCTQSSQALSQSSRSSQFSNPDNFMRNSLLLPLGDIIQLPKESYCVTVADTVKVKSTKHGWYYQACCKCPKIAKGDNPPYVCDKDHETETQIYRYKLEVEVSYEDAKATFVFWDREVTQLLGITAAQLRANMIKAGVKNPLEYPQIIETISEKTMVFKVKWQPYWKNCSVICIKEGKPIVDMIKSKFPNQMVKNEATNDIEIESIQLVETSVTSENNPEGLSQLTPTKGFGDLLKVNDIMQLDGTPSSKLHEHIEIETTPSSKPPLTRIASSKAYQAQINAAKSSSSKKMKLVKTEKKD* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3217 549 MobiDBLite consensus disorder prediction 529 549 - -
Mal8g3217 549 Pfam Domain of unknown function DUF223 39 127 IPR003871 -
Mal8g3217 549 CDD RPA1_DBD_A_like 19 102 - -
Mal8g3217 549 Gene3D - 256 435 IPR012340 -
Mal8g3217 549 PANTHER REPLICATION FACTOR A 1, RFA1 34 364 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal8g3217 549 SUPERFAMILY Nucleic acid-binding proteins 290 412 IPR012340 -
Mal8g3217 549 SUPERFAMILY Nucleic acid-binding proteins 116 242 IPR012340 -
Mal8g3217 549 SUPERFAMILY Nucleic acid-binding proteins 4 106 IPR012340 -
Mal8g3217 549 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 34 364 - -
Mal8g3217 549 Gene3D - 4 104 IPR012340 -
Mal8g3217 549 Gene3D - 109 243 IPR012340 -
Mal8g3217 549 Pfam Replication factor-A C terminal domain 307 411 IPR013955 -
Mal8g3217 549 CDD RPA1_DBD_B_like 135 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3217 Mal-Chr8 88636199 88639151 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3217 18 378 Core DNA Replication Machinery Family AT5G08020 23.747 7.33e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3217 - - mtr:MTR_2g450060 540.806