Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3215 ATGATACTGAACTTCCCTGCCGTGCAACGTGATTTTTATCTTGCGCTGATCTGGTTATTAGTGAATAACCTGTTGATGTTTATAATTCTGAGCATGTGTTCAGCTTTTCTTGAGCGACATTTTAATCAGATAGATAATGAGACTTTAAGAGTTCTTAACACGGATGCTGCTAATACTCTTTCAATGACTGAGGATGAAATAAATTCCTTGCCTATTCGCAAGTATAACGTTTCTGGTCCAACAAATGATGGATCATCCTCTTCCTCAGAGGCAGCTGAGATTAACCAAGACTCTAATGAAGAAGAGGGAAGTGGCAATGGTCCAGAAGAAAAGCTAACATGTACTATATGCATGGACCAAGTTAAGAGGGAGGAATTTGTTCGAAGTTTGCCATGCTTTCATCAGTTTCATGTCGAGTGCATCGATCAATGGCTTCGGCAACAAGGAACATGTCCTATCTGCAAAATTTGTATGGTGATGAGAAGGCAGGGAAACATTGAGAGATAG 507 0.4004 MILNFPAVQRDFYLALIWLLVNNLLMFIILSMCSAFLERHFNQIDNETLRVLNTDAANTLSMTEDEINSLPIRKYNVSGPTNDGSSSSSEAAEINQDSNEEEGSGNGPEEKLTCTICMDQVKREEFVRSLPCFHQFHVECIDQWLRQQGTCPICKICMVMRRQGNIER* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3215 168 SUPERFAMILY RING/U-box 113 160 - -
Mal8g3215 168 ProSiteProfiles Zinc finger RING-type profile. 114 155 IPR001841 -
Mal8g3215 168 MobiDBLite consensus disorder prediction 74 102 - -
Mal8g3215 168 PANTHER TARGET OF ERK KINASE MPK-1 35 162 - -
Mal8g3215 168 Pfam Ring finger domain 113 155 IPR001841 -
Mal8g3215 168 MobiDBLite consensus disorder prediction 73 108 - -
Mal8g3215 168 SMART ring_2 114 154 IPR001841 -
Mal8g3215 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 159 IPR013083 -
Mal8g3215 168 CDD RING-H2_PA-TM-RING 113 155 - -
Mal8g3215 168 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 35 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3215 Mal-Chr8 88583773 88585726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3215 35 156 C3H Transcription Factor Family AT3G55530 52.381 5.57e-41 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3215 K16283 - gmx:100805406 150.599