Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3213 ATGAGTTCTTCTTTTCAAGTGAGCAACCATAGGGGAGATGTGGAAAGAGGATTTTCAGAAGATGTTCCTCAGAGAACCACCATGAGATCAGGTGTTCAAATTTTTTTTTTTGATCGAATAAAATTTTGCCGGCCATTGCATCAATTGAATAACCTGTTGATGTTTATAATTCTGAGCATGTGTTCAGCTTTTCTTGAGCGACATTTTAATCAGATAGATAATGAGACTTTAAGAGTTCTTAACACGGATACTGCTGCTAATACTCTTTCAATGACTGAGGATGAAATAAATTCCTTGCCTATTCGCAAGTATAACGTTTCTGGTCCAACAAATGATGGATCATCCTCTTCTTCAGAAGCAGCTGAGATTAACCAAGACTCTAATGAAGAAGAGGGAAGTGGCAATGGTCCAGAAGAAGAGCTAACATGTACTATATGCATGGACCAAGTTAAGAGGGAGGAATTTGTTCGAAGTTTGCCATGCTTTCATCAGTTTCATGTCGAGTGCATCGATCAATGGCTTCGGCAACAAGGAACATGTCCTATCTGCAAAATTTGTATGGTGATGAGAAGGCAGGGAAACATTGAGAGATAG 594 0.3906 MSSSFQVSNHRGDVERGFSEDVPQRTTMRSGVQIFFFDRIKFCRPLHQLNNLLMFIILSMCSAFLERHFNQIDNETLRVLNTDTAANTLSMTEDEINSLPIRKYNVSGPTNDGSSSSSEAAEINQDSNEEEGSGNGPEEELTCTICMDQVKREEFVRSLPCFHQFHVECIDQWLRQQGTCPICKICMVMRRQGNIER* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3213 197 Pfam Ring finger domain 142 184 IPR001841 -
Mal8g3213 197 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 63 191 - -
Mal8g3213 197 SMART ring_2 143 183 IPR001841 -
Mal8g3213 197 SUPERFAMILY RING/U-box 138 189 - -
Mal8g3213 197 MobiDBLite consensus disorder prediction 102 139 - -
Mal8g3213 197 CDD RING-H2_PA-TM-RING 142 184 - -
Mal8g3213 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 188 IPR013083 -
Mal8g3213 197 MobiDBLite consensus disorder prediction 103 131 - -
Mal8g3213 197 PANTHER TARGET OF ERK KINASE MPK-1 63 191 - -
Mal8g3213 197 ProSiteProfiles Zinc finger RING-type profile. 143 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3213 Mal-Chr8 88492503 88497446 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3213 63 185 C3H Transcription Factor Family AT3G55530 52.756 5.54e-40 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3213 K16283 - gmx:100805406 163.31