Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3168 ATGAGTCAAATGAAGGATCCATCATCACTTGCTGCAACTCTTATTGACAATCACCATCATGGTGGGTTCTTTAACAACTCAGTTGATTCAAATTTGGCTTTTGCCACCCCAGAAAATCAACATCAGATGAGGGAACATTTACATCCTCTGGTGCGTCATCTTACACCAAACACTTCGACATCAAAGGTGACAAGAATGTTGCTAGAAATAGACCAATCAGAAGTCATCCATCTGATTGAGTCTCCGGAAGAATTGAAAATAAAGGTTTATGAGGCAATTCAAGTCCTTCGTGAAGCTTCACTAGGTCGTGGAGTTGGTGATCAACTTTACTCATAG 336 0.4048 MSQMKDPSSLAATLIDNHHHGGFFNNSVDSNLAFATPENQHQMREHLHPLVRHLTPNTSTSKVTRMLLEIDQSEVIHLIESPEELKIKVYEAIQVLREASLGRGVGDQLYS* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3168 111 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 23 101 IPR002004 GO:0003723
Mal8g3168 111 PANTHER RNA BINDING PROTEIN 19 102 - -
Mal8g3168 111 Pfam Poly-adenylate binding protein, unique domain 32 96 IPR002004 GO:0003723
Mal8g3168 111 PANTHER POLYADENYLATE-BINDING PROTEIN 19 102 - -
Mal8g3168 111 Gene3D - 25 100 - -
Mal8g3168 111 SMART poly_2 36 99 IPR002004 GO:0003723
Mal8g3168 111 SUPERFAMILY PABC (PABP) domain 29 99 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3168 Mal-Chr8 86965582 86966095 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3168 27 111 Eukaryotic Initiation Factors Gene Family AT1G49760 52.273 1.85e-18 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3168 K13126 - gmx:100798998 105.531