Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3166 ATGAGTCAAATGATGGACCCATCTTCACTTGCTGCAACCCTTATTGACAATCACCATCATGGTGGATTCTTTAACAACCCAATTGATTCAAATTTGGCTTCTACCACCCAGAAAATCAACATCAGGAATCATTTGCTTGCTGCAGTGGCAGCTAGCAAATCGGCAACGCATAGACCATTTGAGATGAGGGAACATTTACATCCTCTGGTGCGTCGTCTTACAGCAAACAATTATACATCAAAGGTGACAAGAATGTTGCTAGAAATGGACCAATCAGAAGTCATCCATCTGATTGAGTCTCCAGAAGAATTGAAAAGAAAGGTGTATGAGGCAATGCAAGTCCTTCGTGAAACTTCACCAGGTTGTGGAGTTGGTGATCAACTTTACTCATAA 393 0.4148 MSQMMDPSSLAATLIDNHHHGGFFNNPIDSNLASTTQKINIRNHLLAAVAASKSATHRPFEMREHLHPLVRRLTANNYTSKVTRMLLEMDQSEVIHLIESPEELKRKVYEAMQVLRETSPGCGVGDQLYS* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3166 130 PANTHER POLYADENYLATE-BINDING PROTEIN 5 121 - -
Mal8g3166 130 SMART poly_2 59 118 IPR002004 GO:0003723
Mal8g3166 130 PANTHER RNA BINDING PROTEIN 5 121 - -
Mal8g3166 130 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 42 120 IPR002004 GO:0003723
Mal8g3166 130 Pfam Poly-adenylate binding protein, unique domain 64 115 IPR002004 GO:0003723
Mal8g3166 130 SUPERFAMILY PABC (PABP) domain 46 118 IPR036053 GO:0003723
Mal8g3166 130 Gene3D - 37 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3166 Mal-Chr8 86807904 86809661 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3166 18 130 Eukaryotic Initiation Factors Gene Family AT4G34110 40.336 1.03e-15 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3166 K13126 - mtr:MTR_0913s0010 97.0561