Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3126 ATGGATAAAGATCGTAAGCATGATGATTATGAGAAAACCTATGAAGAGCCGGAAAAAAGGATGAAAAGGTCTTCTTGTTCACTATCAAGTGATGAAGATGATGCTAAGCATGAGGTTTTTGTTCAAGAATCTACACACAAATCTCACAATCTTAAGAAGAAACTTAATCATCATTCAGAAATAAAGGTGGAAATCCCTTTCTCAATACAAGGTAGTTGTAATAATAGGGCTAATTTTGATAAAGATGGTAAGCATGATTATGAGGACACCTATGAAGATTCACTATCAAGTGATGAAGATGATGCTAAGGATGAAGTTTCTATTCAAGATTGTACATACAAGTGCAATATTTGTGGAAAAACTTTTAGCAACGGAAAAGCGTTGGGTGGTCATCGTAGATCTCACAATCTTAATGTTGTGAATCCGACGATTAATCAAACTTAA 444 0.3423 MDKDRKHDDYEKTYEEPEKRMKRSSCSLSSDEDDAKHEVFVQESTHKSHNLKKKLNHHSEIKVEIPFSIQGSCNNRANFDKDGKHDYEDTYEDSLSSDEDDAKDEVSIQDCTYKCNICGKTFSNGKALGGHRRSHNLNVVNPTINQT* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3126 147 SUPERFAMILY beta-beta-alpha zinc fingers 111 136 IPR036236 -
Mal8g3126 147 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Mal8g3126 147 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 135 IPR013087 -
Mal8g3126 147 MobiDBLite consensus disorder prediction 78 102 - -
Mal8g3126 147 Gene3D Classic Zinc Finger 101 146 - -
Mal8g3126 147 Pfam C2H2-type zinc finger 113 135 - -
Mal8g3126 147 SMART c2h2final6 113 135 IPR013087 -
Mal8g3126 147 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3126 Mal-Chr8 85303891 85304422 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3126 113 146 C2H2 Transcription Factor Family AT1G02030 52.941 6.30e-07 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal8g3126 zf-C2H2_6 1.5e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3126 - - cam:101497250 79.7221