Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3124 ATGGATAAAGATTATGATGCTAAGCATGAGGTTTCTGTTCATGAATCTACACACAAGTGCAATTTTTGTGGAAAAACTTTTAGCAATGGAAAAGCATTGGGTAGTCACCGAAGATCTCACTTTCTTCTTAAGAAGAAACCTAATCATCATTCACAAAAGGTGGAAACCCCTATCTCAATACAAGGTAGTAATAATAATAGGGCTAGTTTTGATAAAGATCGTAACCATGATTATGAGAAAACCTATGGAGAGTCGGAAAAGATGATGAAAAGGTCTTATAGTTTGCTATCAAGTGATGAAGATGATGCTAAGCATGAGGTTTTTGTTCAAGAATCTACACACAAGTGCAATGTTTGTGGATAA 363 0.3499 MDKDYDAKHEVSVHESTHKCNFCGKTFSNGKALGSHRRSHFLLKKKPNHHSQKVETPISIQGSNNNRASFDKDRNHDYEKTYGESEKMMKRSYSLLSSDEDDAKHEVFVQESTHKCNVCG* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3124 120 Pfam C2H2-type zinc finger 18 40 - -
Mal8g3124 120 ProSiteProfiles Zinc finger C2H2 type domain profile. 18 45 IPR013087 -
Mal8g3124 120 ProSitePatterns Zinc finger C2H2 type domain signature. 20 40 IPR013087 -
Mal8g3124 120 SUPERFAMILY beta-beta-alpha zinc fingers 17 120 IPR036236 -
Mal8g3124 120 SMART c2h2final6 18 40 IPR013087 -
Mal8g3124 120 MobiDBLite consensus disorder prediction 53 68 - -
Mal8g3124 120 MobiDBLite consensus disorder prediction 43 76 - -
Mal8g3124 120 Gene3D Classic Zinc Finger 2 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3124 Mal-Chr8 85268716 85269166 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3124 15 96 C2H2 Transcription Factor Family AT1G02030 35.294 8.23e-08 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal8g3124 zf-C2H2_6 8.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3124 - K09228 cam:101497250 73.9442