Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3122 ATGTTGCATGCCAAAAATCAGGCTCTTCTCCAAATGCAAGATATTCCTTCTGCAGTTAGTGCTATACAATTTTATGCAAATGCTCAACCAAGCATAAGGGGGAAAAATGTTTATGTCCAGTTTTCCTCTCATCGAGAAATAGGGAGAATTAATCAAAGTCAAGGGCGAGAAGATGAGCCAAATCGTATTCTCTTAGTTTCAATTCATCAAGTGTTGTATCCTATGACTCTGGATGTGCTACAACAAGTATTCTCTCCCCATGGATATGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGCTTTCAAGCTCTCATCCAGTATGAAACTCGTCAGAGTGCCGTGGCTGCCAGAGGTGCACTTCAGGGACGCAATGTTTATGATGGTTGCTGTCAGCTGGATAGTCAGTTCTCGAACCTTGATGAACTACAAGTGAACTACAATAATGATCGATCAAGGGACTTTACCAACCCAAATCTGCCCACGGAGCAGAAAGGCCGATCTTTACAAATGATCAATGCTCAAGAGATTGAAGCTGCCTTCAAGGGAGAATTGCCTCCTGGAATAACTGGAACAAATAAAAGGTGTACAATTCTTGTCACAAATCTCAATCCCGATAGAATCGATGAGAGTAAACTATTCAACCTGTTCTCTCTTTATGGGAACATTGTCAGAATCAAACTTCTCCGAAGTAAACCAGATCATGCACTTGTCCAGATGGGAGATGGTTTCCAAGCTGAATTGGCAGTACACTTTCTGAAGTATGTTGAAAGGAGAAAACACAACATAGGATCCCAAAGGATCTATGTAGCATTCTTGAATGATATTCAAGCATGCGTCATAGATCATTCGGGATCCTATGTTGTGTTTCCTCCTTCCAACATTCCGGAATTAAAGATTTCTATCGATGGTCAAAATTCATCAACAATGTCACTTCTTTCCTCAGTATTTGTCATCTATGACTACTATAGTCGATCTCTTTCCAATAAACACAACATTTCCACTTTTAAAAATTTAAATTGGTCAAGCAAAATCGCAACAAGTTCTTTGTTGACTGCGGCTTTTCAAGTATTGATGTTTGGTCCAAAAGGAGTGAATTTGAATTGTGTAGATGTTGTTGTTAACTCACTCGTGACCACAATCATCAATAACATCAAGGATGCTTTGATCAATGCCTAA 1179 0.3944 MLHAKNQALLQMQDIPSAVSAIQFYANAQPSIRGKNVYVQFSSHREIGRINQSQGREDEPNRILLVSIHQVLYPMTLDVLQQVFSPHGYVEKIVTFQKSAGFQALIQYETRQSAVAARGALQGRNVYDGCCQLDSQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRSLQMINAQEIEAAFKGELPPGITGTNKRCTILVTNLNPDRIDESKLFNLFSLYGNIVRIKLLRSKPDHALVQMGDGFQAELAVHFLKYVERRKHNIGSQRIYVAFLNDIQACVIDHSGSYVVFPPSNIPELKISIDGQNSSTMSLLSSVFVIYDYYSRSLSNKHNISTFKNLNWSSKIATSSLLTAAFQVLMFGPKGVNLNCVDVVVNSLVTTIINNIKDALINA* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3122 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 275 IPR000504 GO:0003723
Mal8g3122 392 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 255 - -
Mal8g3122 392 SUPERFAMILY RNA-binding domain, RBD 60 161 IPR035979 GO:0003676
Mal8g3122 392 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 255 - -
Mal8g3122 392 SUPERFAMILY RNA-binding domain, RBD 192 272 IPR035979 GO:0003676
Mal8g3122 392 Gene3D - 61 165 IPR012677 -
Mal8g3122 392 Gene3D - 1 60 IPR012677 -
Mal8g3122 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 254 - -
Mal8g3122 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 - -
Mal8g3122 392 Gene3D - 190 284 IPR012677 -
Mal8g3122 392 SMART rrm1_1 65 134 IPR000504 GO:0003723
Mal8g3122 392 SMART rrm1_1 197 271 IPR000504 GO:0003723
Mal8g3122 392 Pfam RRM-like domain 61 138 IPR021790 -
Mal8g3122 392 SUPERFAMILY RNA-binding domain, RBD 3 55 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3122 Mal-Chr8 85145900 85150669 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3122 276 389 Homeobox Transcription Factor Family AT1G73360 33.043 5.55e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3122 K14948 - gmx:100798234 425.631