Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3071 ATGGATCCTAATGGTTCTGTTGATGATAAGTCTGAAAATAGACTCTACATTGGCAATCTTGATCTCAGAATTACAGAAGCTGCTCTGCTCAAAATGTTCTCTCCTTATGGAAAGATCATATCCGAGGACTTCTTGTGGCACACTCGTGGCCCAAAACGCGGGGAGCCACGCGGTTTCGCCTTTATCCAGTATAGCACAAAAGAGGAAGCAATATTGGCCAAGGAGAAAATGCACGGGAGGTTAGCTTGCAGCCGGCCATTGGTTGTTCGCCTAGCGGGTGAGAGGTACGCGCTGGAAAAGGCAGATAGCTCTACAAAAGCAGTAGGTGAAGGTCACAAGTTACATCTCACTGGTGGTGGCATGGGTCAGACGAGTCGAAGTGCGAAAATAGCTGCAATAAAAAACAAGTTGAAGTCTTTAGAGGAGGATAACTCTAAGACCAAGAAACAGAAGCAGAGTGACAATATATCTTGA 474 0.4578 MDPNGSVDDKSENRLYIGNLDLRITEAALLKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSTKEEAILAKEKMHGRLACSRPLVVRLAGERYALEKADSSTKAVGEGHKLHLTGGGMGQTSRSAKIAAIKNKLKSLEEDNSKTKKQKQSDNIS* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3071 157 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 6 153 - -
Mal8g3071 157 Gene3D - 10 106 IPR012677 -
Mal8g3071 157 PANTHER RNA-BINDING PROTEIN 18-RELATED 6 153 - -
Mal8g3071 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 86 IPR000504 GO:0003723
Mal8g3071 157 MobiDBLite consensus disorder prediction 102 128 - -
Mal8g3071 157 CDD RRM_RBM18 14 92 IPR039157 -
Mal8g3071 157 Coils Coil 130 150 - -
Mal8g3071 157 SUPERFAMILY RNA-binding domain, RBD 6 97 IPR035979 GO:0003676
Mal8g3071 157 MobiDBLite consensus disorder prediction 138 157 - -
Mal8g3071 157 SMART rrm1_1 14 90 IPR000504 GO:0003723
Mal8g3071 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3071 15 92 Eukaryotic Initiation Factors Gene Family AT1G71770 39.744 3.16e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3071 K24527 - gmx:100806572 271.937