Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3066 ATGAGTAGACGGAAGGTGAAGCTTTCCTTTATCACCAATGCTTTGGCAAGGAAGGCAACCTACAATAAAAGAAAAAAGGGTATCATAAAGAAGGTGACCGAACTCACAACTCTTTGTGGTATTCCTGCTTGTGCTATAATTTCAAATCCTTTTAATTCTCAAACAGAGGTCTGGCCAGATCTAGAGGGAGCAAAGAAGGTGATTGAGAGGTATCAGAATTCATCTGTTATAGATGAATCCAAGAATTTGAACCAAGAGAGGCTAATCAAACAAAATATTGCTAAAGCTAGGGACCAACTAAGAAAGTTGAAACAAAAGAATCATGAGAAAAAGATGAATCTTCTTATGCTGGAGTCCATGGAAAACAAAAATTTACCAGATCACCTCACTGCTGAAGAGCTGGAAGATTTTAATAAGTTTGTTGAGATGAAGTTGAAAGAAGTTGATACTGGTACCGTTGAAAGATGA 468 0.3718 MSRRKVKLSFITNALARKATYNKRKKGIIKKVTELTTLCGIPACAIISNPFNSQTEVWPDLEGAKKVIERYQNSSVIDESKNLNQERLIKQNIAKARDQLRKLKQKNHEKKMNLLMLESMENKNLPDHLTAEELEDFNKFVEMKLKEVDTGTVER* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3066 155 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Mal8g3066 155 PANTHER MADS BOX PROTEIN 3 150 - -
Mal8g3066 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal8g3066 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal8g3066 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal8g3066 155 Coils Coil 86 113 - -
Mal8g3066 155 Gene3D - 15 125 IPR036879 GO:0003677|GO:0046983
Mal8g3066 155 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 150 - -
Mal8g3066 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mal8g3066 155 CDD MADS_SRF_like 3 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal8g3066 155 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3066 Mal-Chr8 83351894 83352361 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3066 3 145 Type I MADS-box Gene Family AT1G65300 41.667 4.05e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal8g3066 SRF-TF 6.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3066 - - gmx:100792290 186.808