Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3017 ATGCAAGAGTCAGAAGAAGAAAATCATGACCATCCTCAAAAGTCAAAGCCACTAGAGGAAAATGTGTTTTCCATGGATTTTGATATTGACTTTGAAAATTCATGGCCTTTGGATCATATGCACCCTTTTTTCTTGCCTAATATCTCTGAGCAACCTTTTTCTCCTATTTGGGCTTTTTCTGATGATGTTGATGATCAGAGCATTGCAGCTTCAGGTAACAAAACAAACACAACCGAAAACCGAGTCGAAAACGATGACAAGAAAAAACATGTGACACCACGTGTAGCTCTACCACCTTTACCAAATCCACATGGTTATTGTCTAATCAAAGAAAGAATGACACAAGCTCTTAGAACCTTCAAAGAGTTAACTGAACAAAATATTCTAGCTCAAGTTTGGGCGCCGGTGAGGAACGGAAACGGGTATAAACTCACAACTTCAGGCCAACCATTTGTTCTTGATGCACATAGTAATGGACTTCATCAGTATAGAACAGTTTCTTTGATGTATATGTTTTCTGTTAATGGAGAAAACGACGAAATTCTAGGACTTCCTGGACGAGTTTTTCAACAGAAGTTACCAGAATGGACTCCTAATGTTCAGTATTATTCGAGTAAAGAGTATTCAAGGCTAAATCATGCTCTACATTATAATGTTCGTGGAACTTTGGCTTTGCCGGTGTTTGAACCTCCGGGGCAATCATGTGTTGCGGTGTTGGAATTGATTATGACTTCACAGAAGATTAACTATGCTCCTGAAGTTGATAAAGTCTGCAAAGCACTTGAGGCAGTAAATTTGAGGAGTTCAGAAATTTTGGAGCATCCATACAGTCAGATATGTAACGAAGACCGCCAGAATGCCTTATCCGAGATTTTGGAGATACTGACAGTGGTGTGTGAAACTCATAATTTACCTTTGGCACAAACATGGGTTCCATGTAGACATAGAAGTGTTTTGGCTCATGGTGGTGGTCTTAAGAAAAGTTGCTCAAGTTTCGATGGTTATTGTATGGGACAAGTTTGCATGTCGATAACTGAGGTAGCATTCTATATCATAGATTCTCACACATGGGGTTTCCATGATGCATGTGTTGAACATCACTTACAACAAGGTCAAGGAGTTGCTGGAAGAGCTTTTTTGTCACAAAACATGTGTTTTTGTGGAAACATTACGCAATTCTGCAAAACCGATTACCCTTTAGTACACTATGCTCTCATGTTTGGTTTAACAAGCTCCTTTTCAATCTGTTTACAAAGTTCTCATACCGGAAGTGATGATTATGTACTAGAGTTTTTTCTTCTACCGAGTATCAATGAATTTTGTGTACAAAAGGGTTTGTTAGGATCAATATTAGCAACAATGAAACAAAATTTCCAAAGTCTTAAGGTTGCTTCTGGTGTTGAACTTAAGGAGGATGGATCAATTGAAATTGTTGAAATAATTAACAGAACAGTTCACTCGAGGCTTGAATCTGTTCCGATTATTCAATCTGCTAAATTATCAGCTAGACATGATGATGCCTCGGTGGATATGGAGGAGAGACTGCCACTAGATCAATCACGAAGGAAAATAAATTTTGATGACATAAATGATAGAGGGAATCTTGATGATAATCCAGGTGGAAGCATTGATCATATCCCTTCCTTGGAGACTGAAACCAAAAAGAAACCTTCGTTGAGAAAACGCGGAAAAGCTGAGAAATCAATTAGTCTTGAAGTCTTGCAAGATTATTTCAGTGGGAGTCTAAAGGATGCTGCAAAGAGCCTTGGAGTTTGTCCTACTACAATGAAGAGAATCTGCAGGCAGCATGGAATATCTCGTTGGCCATCTCGAAAAATCAAAAAGGTTAACCGTTCGTTGTCCAAGCTCAAGTGTGCTATTGAATCGGTCCATGGTGTTGAAGGTGCATTTGGTTTGAACTCTTCAACTACAAGTCCACTCCCTATCGCTGCTGGTTCCTTTGATGAACCTTCTACTTCGAACAAGTTTGAACACCATACCTCATTAAGCATAATGCCATCAGAACCTAAGAAGAACGAAAATGATTTAGATGCGTCTAAATTAGAACCTCAAGAACCATTTGGACGAATGCTAATCGAAGGTGCTGATAGTTCTAAAGACTTGAAAAATATTTGTCCTTCGACAGATGTTGTCTTGGAGGATCAGATCCTAGAAGCTTCAAGGATTCATCCTCCATGTTCTGATTTTGCTCCTATGCAAATGCCACACATGGATACTCTTAACTTTGCAGCTCAGAAAGAGATGAGGAGTGTGACTATTAAGGCAACATATAGAGATGATCTCATAAGGTTTAGGGTTTCTTTGAACTGTGGCATTGTGGAATTGAAAGAAGAAATTGCTAAAAGATTGAAACTAGAGGTAGGGACATTTGATATCAAGTATTTGGATGATGATCAAGAGTGGATATTGGTAGCTTGTGATGCAGACTTGCAGGAATGCATGGATATTTTAACATTGTCAGGAACCAACATGATCAGGCTTGTTGTGCATGATATAGTTTCAATTCTTGGAAGCTCGGTTGAGAGCTCGGCGGAGTGA 2559 0.3908 MQESEEENHDHPQKSKPLEENVFSMDFDIDFENSWPLDHMHPFFLPNISEQPFSPIWAFSDDVDDQSIAASGNKTNTTENRVENDDKKKHVTPRVALPPLPNPHGYCLIKERMTQALRTFKELTEQNILAQVWAPVRNGNGYKLTTSGQPFVLDAHSNGLHQYRTVSLMYMFSVNGENDEILGLPGRVFQQKLPEWTPNVQYYSSKEYSRLNHALHYNVRGTLALPVFEPPGQSCVAVLELIMTSQKINYAPEVDKVCKALEAVNLRSSEILEHPYSQICNEDRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGLKKSCSSFDGYCMGQVCMSITEVAFYIIDSHTWGFHDACVEHHLQQGQGVAGRAFLSQNMCFCGNITQFCKTDYPLVHYALMFGLTSSFSICLQSSHTGSDDYVLEFFLLPSINEFCVQKGLLGSILATMKQNFQSLKVASGVELKEDGSIEIVEIINRTVHSRLESVPIIQSAKLSARHDDASVDMEERLPLDQSRRKINFDDINDRGNLDDNPGGSIDHIPSLETETKKKPSLRKRGKAEKSISLEVLQDYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCAIESVHGVEGAFGLNSSTTSPLPIAAGSFDEPSTSNKFEHHTSLSIMPSEPKKNENDLDASKLEPQEPFGRMLIEGADSSKDLKNICPSTDVVLEDQILEASRIHPPCSDFAPMQMPHMDTLNFAAQKEMRSVTIKATYRDDLIRFRVSLNCGIVELKEEIAKRLKLEVGTFDIKYLDDDQEWILVACDADLQECMDILTLSGTNMIRLVVHDIVSILGSSVESSAE* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3017 852 MobiDBLite consensus disorder prediction 650 675 - -
Mal8g3017 852 CDD PB1_NLP 758 838 IPR034891 -
Mal8g3017 852 MobiDBLite consensus disorder prediction 1 20 - -
Mal8g3017 852 Pfam PB1 domain 758 838 IPR000270 GO:0005515
Mal8g3017 852 MobiDBLite consensus disorder prediction 548 564 - -
Mal8g3017 852 MobiDBLite consensus disorder prediction 68 87 - -
Mal8g3017 852 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 686 - -
Mal8g3017 852 SMART PB1_new 757 839 IPR000270 GO:0005515
Mal8g3017 852 ProSiteProfiles RWP-RK domain profile. 555 636 IPR003035 -
Mal8g3017 852 PANTHER PROTEIN NLP8 688 851 IPR045012 GO:0003700
Mal8g3017 852 PANTHER PROTEIN NLP8 3 686 IPR045012 GO:0003700
Mal8g3017 852 SUPERFAMILY CAD & PB1 domains 755 842 - -
Mal8g3017 852 ProSiteProfiles PB1 domain profile. 757 839 IPR000270 GO:0005515
Mal8g3017 852 MobiDBLite consensus disorder prediction 528 564 - -
Mal8g3017 852 MobiDBLite consensus disorder prediction 650 683 - -
Mal8g3017 852 Pfam RWP-RK domain 568 616 IPR003035 -
Mal8g3017 852 Gene3D - 754 838 - -
Mal8g3017 852 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 688 851 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3017 Mal-Chr8 80746061 80752426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g3017 164 852 NLP Transcription Factor Family AT1G64530 55.540 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Mal8g3017 PB1 1.1e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3017 - - mtr:MTR_0022s0430 1561.58