Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2825 ATGGAGAGAGCATTTGATTCATTGTCTGATGTTGTTCCTGGAAGGGATACATGGAGGATAAAGGTTCGAGTGGTTCGAATTTGGGAGGTCCCAACTTTTCTGAATCCTCAACAGGGTAACTCTCTTGAGTTGGTTTTAGTTGATGAAAAGGGTTCTAAGATTCATGCTACCGTCCGGAAACAACTTACGTACTTATTCCAGAAGAAATTAATTGAAAGAGAGGTGTATAAGATGTCTTATTTTGCTATTGCTCCAGCCTTTGGATCATACCGTACCACGCTTCATCCTTACAAGCTTTTGTTCCAGATGAAAACTAAGGTTCAGTCATGTGTGAGTCAGCTCATTCCAATGTATGGATTAAGCTTTACTGATATTGCCCAAGTGTGCAGCCACACTGTTGATTATGAACACTTAGTTGATGTTATAGGGATGATCACTGGGATATCTGAGGAGAGGGAATATATTAGGGATTCTGCAATCACCAAGATGGTTATCATTGAAATAACTGATCAAAGTGGGAAGGTTGAATGTGCACTCTTTGGTGAATATGTGGAGGTTCTGAAAAAAATGATGGAGTCATCTTCTGAAGGGCTTCCTGTGTCAATTCAGAATGTTAAGAGTACAACTAGGATTTTGCTGAATCCAGATATTCCTCAGGTTGCTGGGTTGAAAAAGGGGATCTCTGAACTTGGCGTTGACTCTGCTTCATCTGTTACTAAGTTGGGTTCACGTTCAAAGCCATCGTTTGATGAAGAATTTCTGCGTATGTTTCCTAAGAAGAGTATTGCACAGCTGAATGACTCAGCTGAGAATGGAAATTTTGTTGTAAGTGCAATTGTGACTGGATTTGTTGAAGGAGAAGAATGGTGGTATCCTGCCTGTAAGTGTCATAGGAGTGTCACTGCAGATTCTGGTGTTTATTATTGCAAAGGATGCGTTAAGCATGTTTTTCAAATGGTTCCTAGGTATAAAGTTAAGGTGATTGTTGAAGATGGTACTGGGGAAGCAGTGTTTGTTCTATTTGATAATGATGTCCATTATCTTCTGGAGAAACCATGCAAAACTCTGGTGTCAAACTCTAATGCTGAAAATGCTGGGTTTTATCCACCTGAACTCATACTGTTGAAGGGTAGTAGAATTCTCTTTAAGGTTGTAAAGTCTTCTGTTTCAAGCTCTCTTTTTGAGGGATCTCACAGGGTCAAGCGTGTTTGTAAAGAACAATCTATCATTGATAGTTTTGCAAGTGATGGTGTTGAATACACACCTACTAAGTCCATAGCATGTGACAAAGAAAGTTCTAGTGCTGCTGTGGATAATGATATTGACTATGCTGCTACTTCTGTAAACATATTCGATGGTGCTATTAACCTTGGTGATGATGCTGAATATGTTGATGAAACTCAAGTTGATAACCTTGTTGAAGGAGCTGATGAGAGTTCTACTAAGCGTAATCTCACAGCATCATTTGATGTTGTTACCGGGACTAGATCTAACAGAAGATTGAAGAAGATTAAAGTTGAAAATGAGTGA 1530 0.3928 MERAFDSLSDVVPGRDTWRIKVRVVRIWEVPTFLNPQQGNSLELVLVDEKGSKIHATVRKQLTYLFQKKLIEREVYKMSYFAIAPAFGSYRTTLHPYKLLFQMKTKVQSCVSQLIPMYGLSFTDIAQVCSHTVDYEHLVDVIGMITGISEEREYIRDSAITKMVIIEITDQSGKVECALFGEYVEVLKKMMESSSEGLPVSIQNVKSTTRILLNPDIPQVAGLKKGISELGVDSASSVTKLGSRSKPSFDEEFLRMFPKKSIAQLNDSAENGNFVVSAIVTGFVEGEEWWYPACKCHRSVTADSGVYYCKGCVKHVFQMVPRYKVKVIVEDGTGEAVFVLFDNDVHYLLEKPCKTLVSNSNAENAGFYPPELILLKGSRILFKVVKSSVSSSLFEGSHRVKRVCKEQSIIDSFASDGVEYTPTKSIACDKESSSAAVDNDIDYAATSVNIFDGAINLGDDAEYVDETQVDNLVEGADESSTKRNLTASFDVVTGTRSNRRLKKIKVENE* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2825 509 CDD RPA1_DBD_C 274 382 IPR013955 -
Mal8g2825 509 CDD RPA1_DBD_A_like 19 107 - -
Mal8g2825 509 PANTHER REPLICATION FACTOR A 1, RFA1 20 357 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal8g2825 509 Gene3D - 246 412 IPR012340 -
Mal8g2825 509 SUPERFAMILY Nucleic acid-binding proteins 260 403 IPR012340 -
Mal8g2825 509 SUPERFAMILY Nucleic acid-binding proteins 120 226 IPR012340 -
Mal8g2825 509 SUPERFAMILY Nucleic acid-binding proteins 4 111 IPR012340 -
Mal8g2825 509 Pfam Domain of unknown function DUF223 43 137 IPR003871 -
Mal8g2825 509 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 357 - -
Mal8g2825 509 Gene3D - 3 110 IPR012340 -
Mal8g2825 509 Pfam Replication factor-A C terminal domain 276 367 IPR013955 -
Mal8g2825 509 CDD RPA1_DBD_B_like 140 225 - -
Mal8g2825 509 Gene3D - 115 235 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2825 Mal-Chr8 72828367 72830848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2825 1 349 Core DNA Replication Machinery Family AT5G08020 23.467 3.66e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2825 - - mtr:MTR_8g062030 570.466