Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2807 ATGGATGGAGGTAGTTGCATAGACGAAAGCACCACCACCGAATCACTTTCGATAACAATCTCACCAGCAAAGAAACCGTCAACGCCTCCGCCTCCAAACAGCCTCTGCCGCGTCGGAAGCGGCGCAAGTGCAGTTGTAGACTCCGACGGCAGTGGCGTTGGAGAAGCCGAGTCACGTAAGCTTCCTTCATCGAAGTACAAAGGTGTGGTGCCACAACCAAACGGACGTTGGGGGGCACAGATTTACGAGAAGCACCAGCGCGTGTGGCTTGGAACCTTTAACCAAGAAGACGAAGCTGGAAAAGCTTACGATGTTGCCGCCCAACGGTTCCGCGGCAAGGACGCCGTTACGAATTTTAAACCACTCTCCGACGATAACAACGACGACATGGAAGTCGAGTTTCTGAACTCACATTCCAAGTCGGAGATAGTTGACATGTTAAGAAAACACACATACAATGACGAGTTAGAACAGAGCAAGCGCAGCCGTGGCTTCGTCAGCAGCAGACGAAGCCATGGCTCTGTACACAGCAGCGCTGGTGATAAAAAGGCGCGTGAGGCTCTATTCGAGAAGGCGGTTACGCCGAGTGACGTTGGGAAGTTAAACAGGTTGGTTATACCGAAACAGCACGCGGAGAAGCACTTTCCTTTACAGAAAGCCGATTGCGGTGCCGCGTCGGCATCTGGGAAGGGAGTGCTTTTGAATTTTGAAGACATTGGAGGGAAAGTGTGGAGGTTTAGATACTCTTATTGGAACAGTAGCCAAAGCTACGTGCTAACAAAAGGTTGGAGCCGGTTCGTTAAGGAGAAGAATCTGAAAGCAGGTGATACGGTTTGTTTTCAACGGTCTACTGGACCGGATAAGCAGCTGTTCATTGATTGGAAAGAAAGGACGAAGAATGTTAACGAGGTTGGGTTGTTTGTCCCGGTTGTTGAGCCGGTTCAGATGGTTCGGTTATTTGGGGTTAATATTTTGAAACTCCCTGGATCCGATGCTAATAATATTAATAATGGCAATGCTATTGCTGGGTTCTGCAATGGAAAGAGGAAGGACTTTAATATGTTTACTTTTGACTCTTGCAAGAAGCCTAAGATTATTGGAGCTTTGTAA 1110 0.4838 MDGGSCIDESTTTESLSITISPAKKPSTPPPPNSLCRVGSGASAVVDSDGSGVGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNQEDEAGKAYDVAAQRFRGKDAVTNFKPLSDDNNDDMEVEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGFVSSRRSHGSVHSSAGDKKAREALFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQKADCGAASASGKGVLLNFEDIGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFQRSTGPDKQLFIDWKERTKNVNEVGLFVPVVEPVQMVRLFGVNILKLPGSDANNINNGNAIAGFCNGKRKDFNMFTFDSCKKPKIIGAL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2807 369 MobiDBLite consensus disorder prediction 1 72 - -
Mal8g2807 369 SMART B3_2 189 298 IPR003340 GO:0003677
Mal8g2807 369 Gene3D AP2/ERF domain 64 121 IPR036955 GO:0003700|GO:0006355
Mal8g2807 369 SUPERFAMILY DNA-binding domain 64 120 IPR016177 GO:0003677
Mal8g2807 369 ProSiteProfiles B3 DNA-binding domain profile. 189 298 IPR003340 GO:0003677
Mal8g2807 369 CDD AP2 64 119 IPR001471 GO:0003700|GO:0006355
Mal8g2807 369 Pfam AP2 domain 64 112 IPR001471 GO:0003700|GO:0006355
Mal8g2807 369 Pfam B3 DNA binding domain 189 296 IPR003340 GO:0003677
Mal8g2807 369 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 369 IPR044800 GO:0003700
Mal8g2807 369 MobiDBLite consensus disorder prediction 1 23 - -
Mal8g2807 369 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 369 - -
Mal8g2807 369 Gene3D - 176 305 IPR015300 -
Mal8g2807 369 ProSiteProfiles AP2/ERF domain profile. 65 120 IPR001471 GO:0003700|GO:0006355
Mal8g2807 369 SUPERFAMILY DNA-binding pseudobarrel domain 188 295 IPR015300 -
Mal8g2807 369 CDD B3_DNA 188 283 IPR003340 GO:0003677
Mal8g2807 369 SMART rav1_2 65 126 IPR001471 GO:0003700|GO:0006355
Mal8g2807 369 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2807 Mal-Chr8 72194472 72195581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2807 5 368 RAV Transcription Factor Family AT1G13260 60.484 2.43e-140 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Mal8g2807 B3 8.8e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2807 K09287 - gmx:100776987 531.176