Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2804 ATGTCGAGCAGAAAGAAAAGTCGAGGTCACCAAAAGACAGAGATGAAAAAGAAGAACAATGAGAGTAACCTGCAAGTAACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCTAGCGAGCTTTGCACCCTTTGTGGTGCATATGTTGCTCTCATTGTATTCTCACTTGGTGAGAAGGTATTTTCATTTGGTCACCCAAATATTGATACGGTCATAGATCGTTATCTCTCTTGGGTCCCACCCCAAAACAATGAGAATAAACGTATGAATGAGCAGAGCCATTTGCGCTTGGAGAATGAAGCTCAATTTTGGTGGGTTTCTCCAATTGATGGGATGAATTGGGTCCAACTTGGATTATTCAAGAAGGCTTTGGAGGATCTTAAAAAACTTGTTGCAGACAATGCTAATAGGGTTGAAATTCAAGATCCACCTTAA 438 0.4155 MSSRKKSRGHQKTEMKKKNNESNLQVTFSKRRSGLFKKASELCTLCGAYVALIVFSLGEKVFSFGHPNIDTVIDRYLSWVPPQNNENKRMNEQSHLRLENEAQFWWVSPIDGMNWVQLGLFKKALEDLKKLVADNANRVEIQDPP* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2804 145 SUPERFAMILY SRF-like 9 88 IPR036879 GO:0003677|GO:0046983
Mal8g2804 145 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 64 IPR002100 GO:0003677|GO:0046983
Mal8g2804 145 Gene3D - 20 95 IPR036879 GO:0003677|GO:0046983
Mal8g2804 145 PANTHER MADS BOX PROTEIN 9 132 - -
Mal8g2804 145 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mal8g2804 145 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mal8g2804 145 MobiDBLite consensus disorder prediction 1 23 - -
Mal8g2804 145 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 9 132 - -
Mal8g2804 145 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mal8g2804 145 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mal8g2804 145 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2804 Mal-Chr8 71884646 71885431 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2804 5 138 Type I MADS-box Gene Family AT5G60440 49.102 2.50e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal8g2804 SRF-TF 6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2804 - - mtr:MTR_1g106070 190.274