Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2799 ATGTTGAGCGGAAAGAAAAGTCGAGGTCGCCGAAATACAAAGATGAAAAAGATGACCAATGAGAGTAACCTGCAAGTAACTTTCTCGAAGCGCCGTAATGGGCTCTTTAAGAAAGCTAGCGAGCTTTGCACCCTTTATGGGGCATATTTTGCTCTCATTGTATTCTCACCTAGTGAGAAGGTATTTTCATTTGGTCACCCAAATGTTGATACAGTCATAGATCACTATCTCTCTCGGATCCCACCGCAAAACAATGTAGCAATGCAAATCATTGAGGCTCACCATAGCGCAAATGTGCCCAAGCTCAATGTTGTACTGACTATAATGAAAGATGCACTAGACAGCGAGAATAAACGTGTGAATGAGCGGGGCCATTTGCGCAAGGAGAATGAAGCTCAATTTTGGTGGGTTTGTCCCATTGATGGGATGAATTCGGTCCAACTTGGATTATTCAAGAAGGCTTTGGAGGATCTTAAGAAACTTGTTGCACACCATGCTAATAGGGTTGAAATTCAAGGTACTTCTACCCAAACCCTCCCATTTTTTGTTGGAAATGGTTCATCCTCCAACATGCCTCTCCAGCATCAGAAAAATTCTCAACAAGCTTCGATCTTTCCACAAGAGTTTTTTCAGAACCCTATGTTGCAACCTCATTTGTTTGGCTTCAGCAATATGGGAGGAGAAGGTGGAAATGCTCCCCGCGGGTTCTTTTGA 714 0.4314 MLSGKKSRGRRNTKMKKMTNESNLQVTFSKRRNGLFKKASELCTLYGAYFALIVFSPSEKVFSFGHPNVDTVIDHYLSRIPPQNNVAMQIIEAHHSANVPKLNVVLTIMKDALDSENKRVNERGHLRKENEAQFWWVCPIDGMNSVQLGLFKKALEDLKKLVAHHANRVEIQGTSTQTLPFFVGNGSSSNMPLQHQKNSQQASIFPQEFFQNPMLQPHLFGFSNMGGEGGNAPRGFF* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2799 237 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mal8g2799 237 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mal8g2799 237 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mal8g2799 237 PANTHER MADS BOX PROTEIN 9 169 - -
Mal8g2799 237 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mal8g2799 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mal8g2799 237 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 9 169 - -
Mal8g2799 237 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Mal8g2799 237 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mal8g2799 237 Gene3D - 20 90 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2799 Mal-Chr8 71514080 71514793 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2799 5 190 Type I MADS-box Gene Family AT5G60440 46.429 3.13e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal8g2799 SRF-TF 1.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2799 - - mtr:MTR_1g105905 288.115