Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2798 ATGTTAAGCGGAAAAAAAAGTCGAGGTCGCCAAAAGACAGAGATGAAAAAGATGACCAATGAGAGTAACCTGCAAGTAACATTATCGAAGCGCCATAATGGGCTCTTTAAGAAAGCTAGCGAGCTTTGCACCCTTTGTGGTGCATATGTTGCTTTCATTGTATTCTCACCTAGTGAGAAGGTATTTTCATTTGGTCACCCAAGTGTTGATACGGTCATAGATCATTATCTCTCTCGGATCCCACCGCAAAACAATGGAGCAATGCAAATCATTGAGGCTCACCGTAGTGCCAATGTGCCCGAGCTCAATGTTGTACTGACTATAATGAAAAATGCACTAGACAGTGAGAATAAACATGTGAATGACCGGGGCCATTTGCACAAGGAGAACGAGGCTCAATTTTGGTGGGTTTGTCCCATTGATGGGATGAAGTCGGTCCAACTTGGATTGTTCAAGAAGGCTTTGGAGGATCTTAAGAAACTTGTTTCACACCATGCGAATAGGGTTGAAATTCAAGGTACTTCTACCAAAACCCTCCCATTTTTTGTTGGAAATGGTTCATCCTCCAACATGCCTCTCCAGCTTCAGCAAAATTCTCAACAAGCTTCGATCTTTCCACAAGAGTTTTTTCAGAACCCTATGTTGCAACCTCATTTGTTTGGCTTCAACAATATGGGAGGAGAAGGTGGAAATGCTGATCCGTGA 705 0.4284 MLSGKKSRGRQKTEMKKMTNESNLQVTLSKRHNGLFKKASELCTLCGAYVAFIVFSPSEKVFSFGHPSVDTVIDHYLSRIPPQNNGAMQIIEAHRSANVPELNVVLTIMKNALDSENKHVNDRGHLHKENEAQFWWVCPIDGMKSVQLGLFKKALEDLKKLVSHHANRVEIQGTSTKTLPFFVGNGSSSNMPLQLQQNSQQASIFPQEFFQNPMLQPHLFGFNNMGGEGGNADP* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2798 234 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mal8g2798 234 Gene3D - 20 89 IPR036879 GO:0003677|GO:0046983
Mal8g2798 234 PANTHER MADS BOX PROTEIN 8 168 - -
Mal8g2798 234 MobiDBLite consensus disorder prediction 1 22 - -
Mal8g2798 234 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Mal8g2798 234 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 8 168 - -
Mal8g2798 234 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mal8g2798 234 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mal8g2798 234 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mal8g2798 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mal8g2798 234 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mal8g2798 234 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2798 Mal-Chr8 71413485 71414189 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2798 5 230 Type I MADS-box Gene Family AT5G60440 42.678 6.29e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal8g2798 SRF-TF 3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2798 - - mtr:MTR_1g105905 269.626