Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2789 ATGTCTCAAGCCAGAAGTTACATGTGGAGAAGGGCAGTTATGGACATTGACCTTAACCGAGCACCTGCGGCTGATGAGAATCCGTCTGGTGAGCAGGAGGGACCTTCAATTCAGACTCATTTGAGGCATGACCTGCAGACACTTGCACTATTTCTTCCTATGGAAGCCATTGCTGCAGATGATGATGTTATTGAAATTTCCTCTAGGGCATTTTATGAGGCTAAAAAAAATTCTAGAAGAAATCGCTTGACGACCATTGATGATGATGATGCTATGGATGTGGACTTAGAAGGAGAGCAGCCTCCAAAGAAACTTGACTTCAGCTGTCCTATATGCCTGGGTCCTTTCGTTGAAGAAATGACGACAAAGTGTGGCCATATTTTTTGCAAGACTTGTATCAAGACTGCTATCAAGGCTAAAGCTAAATGTCCTACCTGCAGAAAAAAGACTAATTTGAGACAAATTATAAGGGTGTATCTCCCAACAACTGATTGA 495 0.4242 MSQARSYMWRRAVMDIDLNRAPAADENPSGEQEGPSIQTHLRHDLQTLALFLPMEAIAADDDVIEISSRAFYEAKKNSRRNRLTTIDDDDAMDVDLEGEQPPKKLDFSCPICLGPFVEEMTTKCGHIFCKTCIKTAIKAKAKCPTCRKKTNLRQIIRVYLPTTD* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2789 164 PANTHER RING ZINC FINGER-RELATED 99 164 - -
Mal8g2789 164 PANTHER ELFLESS, ISOFORM B 3 95 - -
Mal8g2789 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 163 IPR013083 -
Mal8g2789 164 ProSiteProfiles Zinc finger RING-type profile. 109 147 IPR001841 -
Mal8g2789 164 PANTHER ELFLESS, ISOFORM B 99 164 - -
Mal8g2789 164 PANTHER RING ZINC FINGER-RELATED 3 95 - -
Mal8g2789 164 Pfam Zinc finger, C3HC4 type (RING finger) 109 146 - -
Mal8g2789 164 ProSitePatterns Zinc finger RING-type signature. 124 133 IPR017907 -
Mal8g2789 164 SUPERFAMILY RING/U-box 108 152 - -
Mal8g2789 164 SMART ring_2 109 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2789 Mal-Chr8 71066010 71066504 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2789 56 163 C3H Transcription Factor Family AT3G07200 44.697 4.25e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2789 K22651 - gmx:100306616 133.265