LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal8g2735	ATGAGTAACAATTGCCAAACTTCTGGTACTACTCATAACATCAGGGGTTTAATTTCCAACGCTGGTGCTGGTGCTGCTGCTGGGGCAATAGCTGCTACGTTTGTGTGTCCATTGGATGTGATCAAGACAAGACTACAAGTTCATGGCCTTCCTCCTGTGCAGAAAGGTAGTGTTATTATCACGAGCTTGCAGAATATAGTTAGGACTGAAGGCTTCAGGGGAATGTACCGTGGCCTTTCACCAACAATATTGGCACTACTTCCAAACTGGGCAGTTTACTTCACATGTTATGAGCAACTAAAGGGCTTGCTTCGATCACATGAGGGTTGCGACGAACTCACAACTATTGGAAATATTATAGCTGCTGCTGGTGCCGGGGCAGCAACAGCAATATCTACAAATCCATTGTGGGTTGTTAAGACAAGACTCCAAACACAAGGAATGAGGCCTAATGTTATTCCTTACAAGAGTGTTCTTTCCGCTTTGAGAAGGATTACACACGAGGAAGGTCTACGAGGACTATATAGTGGCATTCTACCTTCGTTAGCTGGCGTAAGTCATGTAGCAATTCAATTCCCAGCATACGAAAAGATAAAGTTATACATGGCCCAAAAAGATAACACAACTGTCGACAAGCTAAATCCTGGAAGTGTTGCAATCGCATCATCAATTTCAAAAGTAACTGCCTCTGTAATGACTTATCCGCACGAGGTAATACGTTCACGGCTGCAAGAGCAAGGTCAAGCGAAAAGTAGTGGAGTTCAATATGCCGGGGTTATTGACTGTTCTAAGAAGGTGTTTCAAAAAGAAGGCATTAAGGGATTTTACCGTGGTTGCGCAACTAATCTATTAAGAACAACTCCTTCAGCTGTTATTACATTCACCAGTTATGAGATGATACACAGGTTTTTGGCGCGAACTATACCACAAAATGAGCCTAACAAACCCAAACCAGAAGCCAGTGACATTGATACGGAAAATGGTGATGATAGGGGGCAATCACCATCACAATCTAACAAGATTCCTATTGGAAAGAAAGAGCAGCTAACAAGACATTGA	1059	0.4278	MSNNCQTSGTTHNIRGLISNAGAGAAAGAIAATFVCPLDVIKTRLQVHGLPPVQKGSVIITSLQNIVRTEGFRGMYRGLSPTILALLPNWAVYFTCYEQLKGLLRSHEGCDELTTIGNIIAAAGAGAATAISTNPLWVVKTRLQTQGMRPNVIPYKSVLSALRRITHEEGLRGLYSGILPSLAGVSHVAIQFPAYEKIKLYMAQKDNTTVDKLNPGSVAIASSISKVTASVMTYPHEVIRSRLQEQGQAKSSGVQYAGVIDCSKKVFQKEGIKGFYRGCATNLLRTTPSAVITFTSYEMIHRFLARTIPQNEPNKPKPEASDIDTENGDDRGQSPSQSNKIPIGKKEQLTRH*	353

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal8g2735	352	PANTHER	NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC	11	312	-	-
	Mal8g2735	352	MobiDBLite	consensus disorder prediction	330	344	-	-
	Mal8g2735	352	Gene3D	Mitochondrial carrier domain	112	307	IPR023395	-
	Mal8g2735	352	Gene3D	Mitochondrial carrier domain	2	111	IPR023395	-
	Mal8g2735	352	Pfam	Mitochondrial carrier protein	214	305	IPR018108	-
	Mal8g2735	352	Pfam	Mitochondrial carrier protein	113	204	IPR018108	-
	Mal8g2735	352	Pfam	Mitochondrial carrier protein	18	106	IPR018108	-
	Mal8g2735	352	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	11	312	IPR044712	GO:0006862\|GO:0055085
	Mal8g2735	352	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	213	303	IPR018108	-
	Mal8g2735	352	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	15	103	IPR018108	-
	Mal8g2735	352	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	113	201	IPR018108	-
	Mal8g2735	352	PRINTS	Mitochondrial carrier protein signature	33	47	IPR002067	GO:0055085
	Mal8g2735	352	PRINTS	Mitochondrial carrier protein signature	20	33	IPR002067	GO:0055085
	Mal8g2735	352	PRINTS	Mitochondrial carrier protein signature	128	146	IPR002067	GO:0055085
	Mal8g2735	352	PRINTS	Mitochondrial carrier protein signature	222	244	IPR002067	GO:0055085
	Mal8g2735	352	PRINTS	Mitochondrial carrier protein signature	78	98	IPR002067	GO:0055085
	Mal8g2735	352	MobiDBLite	consensus disorder prediction	308	352	-	-
	Mal8g2735	352	SUPERFAMILY	Mitochondrial carrier	18	299	IPR023395	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal8g2735	Mal-Chr8	68549733	68553611	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal8g2735	33	346	Chloroplast and Mitochondria Gene Families	AT1G25380	63.964	8.29e-145	412

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal8g2735	K15115		-	gmx:100797064	558.14