Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2647 ATGCCAATGAACCATGGCCAAAGCCAACAATCCACAAGATGGTATAAACTATGCTTTATTCCCACAAGTGGTGACAGTTCAGATGATTCTGACACTGAATCTGTAATCATAGCTCCAAGTACTCCAAATCAAACTAGTACATCGAACCAACCTTCTTTGCCGCATCCACCACTATCTCCACCGAATTCGGAACCTGAAATCGACTTGCTTTGTCTACCACCACCTCCTCTGCCTGATTTTTTTCCACTATCACAACGATCAGAGCCGCTACAATTCCAAGCTGCAAACCCAGAACCGTATTATTTTCCACCAGAACCAACGTTATTACCACTAGAATTCCATGATTCAAACCCAGAACCTCAAATTAATCGGCAGTCTTCACAACCATCGCCACTGCCATCACCACCATCAAGTCCAGAACCTCAAATGAACTGGAGTACTCCACCTCCACCGCCACCACCGTTTTTTTTTCCACCAACACAAACATTATTACCACTAGAATTCCATGCTTCAAACCCAGAACCTCGAATTAGCCTGCAGTCTTCACAACCACCACCACCACCACCGCCGCCATCACCACCACGGAATTCATGGAATCACTTCATCTCCCTTATGGATAATTTTTCATCTTCTGTATCCACGCAAGGTCGGCCTGATGACGATCAAAGTGAGTTCCTTCAAATTCCAGATAGCGTTATAAACGCCATGCACATGGTGAGAATCTCAAAGTTGCATTTAGTAGATGAACTCTCTCACTGTCCTATTTGTATGGAAGAGTTTAAACTTGGTGACGAAGCATGTCAGTTACCCTGCAACCATACCTACAAGTTCGAATGCATTCTTCGATGGCTTAACACCAGCAAAACCTGTCCTGTTTGCAGGCTTCAGTTAGATAGTTTTGAAGGACAAGGTAGTTCTTATAACATAGGTGATGATGAAGATAGTTTGGACCTTGAACCTCAAATTCCACCACAAGAAATATATAATTTGGAAAACCTTTTTCAATCTTCTCTGGATTCTCAAGTTACAGAGGATGATGCAGGTGGAAACTCTGATGAAGCTGAGTATGACAGTGCCTGTGATGATGACTCAAGTTGGTATTAA 1104 0.4303 MPMNHGQSQQSTRWYKLCFIPTSGDSSDDSDTESVIIAPSTPNQTSTSNQPSLPHPPLSPPNSEPEIDLLCLPPPPLPDFFPLSQRSEPLQFQAANPEPYYFPPEPTLLPLEFHDSNPEPQINRQSSQPSPLPSPPSSPEPQMNWSTPPPPPPPFFFPPTQTLLPLEFHASNPEPRISLQSSQPPPPPPPPSPPRNSWNHFISLMDNFSSSVSTQGRPDDDQSEFLQIPDSVINAMHMVRISKLHLVDELSHCPICMEEFKLGDEACQLPCNHTYKFECILRWLNTSKTCPVCRLQLDSFEGQGSSYNIGDDEDSLDLEPQIPPQEIYNLENLFQSSLDSQVTEDDAGGNSDEAEYDSACDDDSSWY* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2647 367 MobiDBLite consensus disorder prediction 53 82 - -
Mal8g2647 367 SMART ring_2 253 293 IPR001841 -
Mal8g2647 367 MobiDBLite consensus disorder prediction 174 199 - -
Mal8g2647 367 MobiDBLite consensus disorder prediction 346 367 - -
Mal8g2647 367 MobiDBLite consensus disorder prediction 339 367 - -
Mal8g2647 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 299 IPR013083 -
Mal8g2647 367 MobiDBLite consensus disorder prediction 20 52 - -
Mal8g2647 367 Pfam Ring finger domain 252 294 IPR001841 -
Mal8g2647 367 SUPERFAMILY RING/U-box 232 299 - -
Mal8g2647 367 CDD RING-H2_PA-TM-RING 252 294 - -
Mal8g2647 367 ProSiteProfiles Zinc finger RING-type profile. 253 294 IPR001841 -
Mal8g2647 367 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 212 319 - -
Mal8g2647 367 MobiDBLite consensus disorder prediction 179 196 - -
Mal8g2647 367 MobiDBLite consensus disorder prediction 20 161 - -
Mal8g2647 367 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 212 319 - -
Mal8g2647 367 MobiDBLite consensus disorder prediction 129 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2647 Mal-Chr8 63415414 63416517 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2647 231 313 C3H Transcription Factor Family AT1G68180 42.045 1.39e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2647 K11982 - ccaj:109817940 200.675