Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2580 ATGTCTCCGCCTCAGCCACCCCGCGTCGACCCCAAAATCTGGCAGCTATGCGCCGGTCCCTCCACCAAGATTCCAAAGATTCATTCAAAAGTTTACTACTTCCCACAAGGTCACTTGGAACATGCATGCTCTTCACCTAGCAATAATACACTTGCCGTTCTTGCTAGTCACCGTCCTTTCATTCCATGCATCATCTCAGCCATCGATCTCCTTGCTGATCCTCACACCGATGAGGTCTTTGCCAAACTGCTCCTCACTCCTGGCCAAGAAGATGAGGTTGTTTCTTTTGTCAAGATTCTAACACAATCTGATTCTATTAACTCTGCATTCCCTGTACCTCGCCAATGCGCTGAGTTGATCTTCCCCAAGCTTGACTTACAGGCTCCTTTGCCGTCTCAGAAACTCCTTGTCACCGACGTTCAAGGTAAAGTCTGGGAGTACACTCATAGCTATTGTGGAAATCCCAAAAGACACATGCTCACTGCTGGCTGGAATTCTTTTGTAAAGAAGAAGAAACTTGTTGCTGGCGATTCTCTTGTTTTGATAAAAATCTCAGCAGGACAGGTAATTGTTGGAATCCGCCGGAACATGAAGTTCGCTGCAGCTGAAGCAGCGGCAGAGAAAAAGAAGAAGGGGGGTAAAGATGGTCAGTTGGAGGTGGAGGGAGATGGTTTTTCGTGGAGAGGTAAAAAGGGGAAGTTAACCGAGAAGGCAGTTATAGATGCGGTAGAATTGGCAGAGAAAAACAGGACGTTTGAAGTTGTGTATTATCCGAGGCCTAATTGGTGTGATTTTGTAGTGGATGCAAATGTTGTGGATGACGCTATGAAGATTGGTTGGGCATCTGGAATGAGGGTGAAGCTCCCTTTGAAGAAAGATGAATTTTCAAATTCAAAGACAATATTGTATCATCCTCAGGCGACAATCTCAAATGTGTGTAGTGTCCTTAATTGGCGCATGCTTGAGGTTAATTGGGATGAACCTAAAATCTCGCAGAGTCCAAACCGTGTCAATCCTTGGCAAGTTGAACTTATTCCCCAAACGCCTACATCGTATCTACCATTCCCCTCAATAAAAAAGCCTAGACTAGCCCAGGATTCCACCTTAATTAGTGATAAAAAGGGAAATCCCTCCATTCCTTTTTTAACAATAGAATCTTTGAAAGAAACATTGTGGAACATGGGAACAACGTTGGTTGAGACCAACAACAATGCAAAAAGCAATGTTAATCCTCCTGGTTCAATTAAGTTATTTGGTAAGATCATACATCCTGTCAAAAGCAATGTTCATGATTCTGGTACCAAGGAAGAGGCTGGTTGTAAGGGTTGCAATGACATTGAAGATAAGTAG 1350 0.4385 MSPPQPPRVDPKIWQLCAGPSTKIPKIHSKVYYFPQGHLEHACSSPSNNTLAVLASHRPFIPCIISAIDLLADPHTDEVFAKLLLTPGQEDEVVSFVKILTQSDSINSAFPVPRQCAELIFPKLDLQAPLPSQKLLVTDVQGKVWEYTHSYCGNPKRHMLTAGWNSFVKKKKLVAGDSLVLIKISAGQVIVGIRRNMKFAAAEAAAEKKKKGGKDGQLEVEGDGFSWRGKKGKLTEKAVIDAVELAEKNRTFEVVYYPRPNWCDFVVDANVVDDAMKIGWASGMRVKLPLKKDEFSNSKTILYHPQATISNVCSVLNWRMLEVNWDEPKISQSPNRVNPWQVELIPQTPTSYLPFPSIKKPRLAQDSTLISDKKGNPSIPFLTIESLKETLWNMGTTLVETNNNAKSNVNPPGSIKLFGKIIHPVKSNVHDSGTKEEAGCKGCNDIEDK* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2580 449 CDD B3_DNA 95 195 IPR003340 GO:0003677
Mal8g2580 449 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 379 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal8g2580 449 ProSiteProfiles B3 DNA-binding domain profile. 95 197 IPR003340 GO:0003677
Mal8g2580 449 MobiDBLite consensus disorder prediction 429 449 - -
Mal8g2580 449 Gene3D - 280 350 - -
Mal8g2580 449 Gene3D - 93 197 IPR015300 -
Mal8g2580 449 SUPERFAMILY DNA-binding pseudobarrel domain 91 195 IPR015300 -
Mal8g2580 449 SMART B3_2 96 197 IPR003340 GO:0003677
Mal8g2580 449 Pfam B3 DNA binding domain 96 196 IPR003340 GO:0003677
Mal8g2580 449 PANTHER AUXIN RESPONSE FACTOR 5 379 - -
Mal8g2580 449 Pfam Auxin response factor 242 299 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2580 Mal-Chr8 60394657 60396840 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2580 1 365 B3 DNA Binding Superfamily AT1G77850 40.196 9.99e-91 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mal8g2580 B3 5.3e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2580 - - cam:101503141 380.178