Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2579 ATGTCTCCCTCTCAGCAACGCAGTGTGAATTTCAAAATCTGGCAGCCTTGTGCCGGCCCTTCGGTAAACGTTCCAAAGTTACATTCTAAAGTTTATTACTTCCCACAAGGTCACTTGGAACATGTCTGCCCTTCCCCTAACGCTCACACAATCACCGTTATTGACGGTTATCGTTCCTCCATTCCATGCATCGTTACGGACGTTGATCTCCTAGCTGATCCTCACACCGATGAGGTTTTTGCCAAACTGCTCTTTAGTCCGGTAACTGACGGCCAAGAACTTCCTGAGGTTCTTGATGAAGAAGATGACGGCGATAAGGTTGTTTCCTTTGTAAAGACTCTCACAAAATCTGATTCTAATAACGGGGGTGGATTCTCTGTATCTAGACAATGCGCTGACCTGATTTTCCCAAAGCTTGACTTAGATGCTCCTTTGCCGTCTCAGCAACTTTCCATCACTGATGTTCAAGGCGGAGTTTGGAAGTTCACTCATGTCTACCGCGGTAGACCCAAGAGACACCTCTTTACTACTGGCTGGACTCCGTTTGTGAACAACAAGAAACTCGTCGCTGGGGATTCTGTTGTTTTTATGAAAAACTCGGCTGGAAATCTATTTGTTGGAATCCGCCGGAACATGAAGTTCACAGAAGCTAAGGAAGAGCAGAAGAAGATGGTTATGGAGGCAGTAGAGTCGGCGGAAAAGAATATGGCATTTGAAGTTCTATATTACCCTAGGTCTAACTCGTGCAATTTTGTGGTTGATGCTAAAGTTGTGGATGACGCTATGAAGATTGGTTGGACATCTGGAATGAGAGTGAAGCTTCCTTTGATGACTAATGAATCTTCAAATTCAAAGATCACATTTTTTCAGCCTCAAGGGACAATCTGTAATGTGTCCAATGTCCCCATTTGGGGCATGCTTCAGGTTAACTGGGATGAATCTGAAATCTCGCAAAGTCCAAACCGTGTCAATCCTTGGCAAGTTGAACTTATTTCCCACACACCTGCAATGTATCCACCATTCCACTCAACAAAAAAGCCTAGACTCACTCACGATTCTGCCATGTTTAGTGATACAAAAGGATATCCCTTCATTCCTATGATAGAGTTCCCTTTTTCAACAATGGAATCTTTGAACCATACACTGTTGAATTGCGGTTATATTCCTGCTGGCATGCAGGGAGCCAGGCATGATCATCTATCTGTTTCTGGTTCTTCCAACACTATGAATGATAAGGGTTATGGTTTCTCTGTGAACAATTCAATGGAAGGGTTGAATGGTGCGTCGGCAACAAGAGTAAACATTGGCAGGCCTACATCTGATGACATGTCGCCTCATAACCACAGCAGTTTGAGCACCTGTGGTACAAAGTTGGCTGAGACCCACAACAGCAATGCAAAAAGTGTTATTCCTCCTAGCTCAATTAAGTTATTTGGTAAGATCATACATCCTGTTGAAAGCAATGTTCACGATTCTGGTACCGAGGGAGAGGATGGCTGTAAAGGATCCAATGAAATTTAA 1521 0.4372 MSPSQQRSVNFKIWQPCAGPSVNVPKLHSKVYYFPQGHLEHVCPSPNAHTITVIDGYRSSIPCIVTDVDLLADPHTDEVFAKLLFSPVTDGQELPEVLDEEDDGDKVVSFVKTLTKSDSNNGGGFSVSRQCADLIFPKLDLDAPLPSQQLSITDVQGGVWKFTHVYRGRPKRHLFTTGWTPFVNNKKLVAGDSVVFMKNSAGNLFVGIRRNMKFTEAKEEQKKMVMEAVESAEKNMAFEVLYYPRSNSCNFVVDAKVVDDAMKIGWTSGMRVKLPLMTNESSNSKITFFQPQGTICNVSNVPIWGMLQVNWDESEISQSPNRVNPWQVELISHTPAMYPPFHSTKKPRLTHDSAMFSDTKGYPFIPMIEFPFSTMESLNHTLLNCGYIPAGMQGARHDHLSVSGSSNTMNDKGYGFSVNNSMEGLNGASATRVNIGRPTSDDMSPHNHSSLSTCGTKLAETHNSNAKSVIPPSSIKLFGKIIHPVESNVHDSGTEGEDGCKGSNEI* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2579 506 CDD B3_DNA 109 210 IPR003340 GO:0003677
Mal8g2579 506 Pfam Auxin response factor 228 314 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mal8g2579 506 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 218 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal8g2579 506 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 223 503 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal8g2579 506 Gene3D - 107 212 IPR015300 -
Mal8g2579 506 SMART B3_2 110 212 IPR003340 GO:0003677
Mal8g2579 506 PANTHER AUXIN RESPONSE FACTOR 223 503 - -
Mal8g2579 506 Gene3D - 266 336 - -
Mal8g2579 506 Coils Coil 215 235 - -
Mal8g2579 506 SUPERFAMILY DNA-binding pseudobarrel domain 105 210 IPR015300 -
Mal8g2579 506 ProSiteProfiles B3 DNA-binding domain profile. 110 212 IPR003340 GO:0003677
Mal8g2579 506 PANTHER AUXIN RESPONSE FACTOR 5 218 - -
Mal8g2579 506 Pfam B3 DNA binding domain 110 211 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2579 Mal-Chr8 60384328 60387882 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2579 7 505 B3 DNA Binding Superfamily AT1G77850 37.726 2.80e-114 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mal8g2579 B3 6.8e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2579 - - mtr:MTR_5g040880 481.485