Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2571 ATGTCTCCCTCGCAGCAAAGCAGTACTGTGAACTCCGAAATCTGGCAGACATGCGCCGGCCCTTCGGTAAACGTTCCAAAGTTACATTCTAAAGTTTATTACTTCCCACAGGGTCACTTGGAACATGTCTGCCCTTTCCCTAATGCTAACACAATCACCGTTATTGATAGTTATCGTCCGTCCATTCCATGCATCGTTACGGCCGATGATCTCCTAGCTGATCCTCACACCGATGAGGTTTTTGCCAAACTGCTCCTTAGTCCGGTAACTGACGGCCAAGAACTTCCTGAGGTTCTTGATGAAGAAGATGACGGCGATAAGGTTGTTTCCTTTGTAAAGACTCTCACAAAATCTGATTCTAATAACGGCGGTGGATTCTCTGTACCTAGACAATGCGCTGACCTGATTTTCCCCAAGCTTGACTTAGATGCTCCTTTGCGGTCTCAGCAACTGTCCATCACTGATGCTCATGGCGCGGTTTGGAAGTTCACTCATGTCTACCGCGGTAGACCCAAGAGATACCTCTTTACTACTGGCTGGACTCCGTTTGTGAACAACAAGAAACTCGTCGCTGGGGATTCTGTTGTTTTTATGAAAAACTCGGCTGGAAATCTATTTGTTGGAATCCGCCGGAACATGAGGTTTAAAGAAGCTAAGGCAGAGCAGAGTAAGGTGGTTATGGAGGCGGTGGAGTCGGCAGAAAAGAATATGGCATTTGAAATTCTATTTTACCCTAGGGATAACTCGTGCAATTTTGTGGTTGATGCTAAAGTTGTGGATGACGCTATAAAGATTGGTTGGACATCTGGAATGAGAGTGAAGATTCCTTTGAAGACTGGTGAATCTTCGAATTCAAAGATCACATTTTTTCAGCCTCAAGGGACAATATCTGATGTGTCCAATGTCCCTAATTGGCGCATGCTTCAGGTTAACTGGGATGAACCTGAAATCTCACAAATTTCAAACCGTGTCAATCCTTGGCAAGTTGAACTTATTTCCCACACACCTGCAGTGTATCTACCATTCCTCTCAACAAAAAAGCCTAGACTCGCTCACGATTCTGCCTTTTTTAGTGATACAAAGGGAGATCCCTTCATTCCTGTGATAGAGTTCCCTTTTTCAACAGTGGAATCTTTGAACCACGCATTATTAAATTGCGGTTATTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATACTTTATCTGTATCAGATCATTTATCTATATCAGGTTCTTCCAACTCTTTGAATGATAAGGGTTATGGTTTCTTTGTGAACAATTCAATTGCAGGGTTGAGTGATTTGTCGTCAACAAGTGTAAACATTGGCATGTGTACATCTAATGAATTGTCGCCTCATAACCATAGTAGTTTGAACACCTGTGGGACAAAGTTGGTTAAGACCCACAACAGCAGTCCAAAGAGAGTTAGTTCTCGTTCAATTAAGTTATTTGGTAAGATCATACAGCCTGTTGAAAGCAATGTCCATGATTCTGGTACCAAAGGAGAGGATGACTGTAAGGGATGCAATGAAAATGAATGCATCGACAAAGAATGA 1557 0.4316 MSPSQQSSTVNSEIWQTCAGPSVNVPKLHSKVYYFPQGHLEHVCPFPNANTITVIDSYRPSIPCIVTADDLLADPHTDEVFAKLLLSPVTDGQELPEVLDEEDDGDKVVSFVKTLTKSDSNNGGGFSVPRQCADLIFPKLDLDAPLRSQQLSITDAHGAVWKFTHVYRGRPKRYLFTTGWTPFVNNKKLVAGDSVVFMKNSAGNLFVGIRRNMRFKEAKAEQSKVVMEAVESAEKNMAFEILFYPRDNSCNFVVDAKVVDDAIKIGWTSGMRVKIPLKTGESSNSKITFFQPQGTISDVSNVPNWRMLQVNWDEPEISQISNRVNPWQVELISHTPAVYLPFLSTKKPRLAHDSAFFSDTKGDPFIPVIEFPFSTVESLNHALLNCGYFPAGMQGARHDTLSVSDHLSISGSSNSLNDKGYGFFVNNSIAGLSDLSSTSVNIGMCTSNELSPHNHSSLNTCGTKLVKTHNSSPKRVSSRSIKLFGKIIQPVESNVHDSGTKGEDDCKGCNENECIDKE* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2571 518 PANTHER AUXIN RESPONSE FACTOR 6 217 - -
Mal8g2571 518 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Mal8g2571 518 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 223 513 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal8g2571 518 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 217 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal8g2571 518 Gene3D - 267 337 - -
Mal8g2571 518 CDD B3_DNA 110 211 IPR003340 GO:0003677
Mal8g2571 518 Pfam Auxin response factor 229 309 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mal8g2571 518 Gene3D - 108 213 IPR015300 -
Mal8g2571 518 SUPERFAMILY DNA-binding pseudobarrel domain 106 211 IPR015300 -
Mal8g2571 518 SMART B3_2 111 213 IPR003340 GO:0003677
Mal8g2571 518 PANTHER AUXIN RESPONSE FACTOR 223 513 - -
Mal8g2571 518 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2571 Mal-Chr8 60280446 60299208 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2571 10 513 B3 DNA Binding Superfamily AT1G77850 38.612 8.11e-119 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mal8g2571 B3 2.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2571 - - mtr:MTR_5g040880 472.241