Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2550 ATGGGTCGTGTTAAACTTGAAATAAAAAGAATAGAGAACACAACGAATAGACAAGTTACATATTCAAAGCGTAGAAATGGTCTCATCAAGAAAGCTTATGAGTTATCAATCCTTTGTGATATTGATATCGCACTTATAATGTTTTCTCCATCAAATCGTCTTAGTCACTTTTCCGGTAAAAGAAGGATAGAGGATGTTTTAACTCGTTACATTAATCTTCCTGACCAAGAAAGAGATAATGCTGTAAGTTTTCCTGAGCTACCCTACCGTAGGGGTATTCAGAACAAGGAGTATTTGCTCAGGATACTTCAACAGTTGAGGAGTGAAAATGATATAGCCCTTCATATGTCCAATTCGGGAGACATTAACTCTGAGATTGAGGAACTCCAACAAGAAGTTAGTAGGCTACAACAACAACTACAAATGGCAGAGGAGCAGATAAGGATATACGAACCCAACCCATTAAAGATGACATCTATGGCAGAGCTTGAAACCGGTGAAAAAAACGTAGTAGAAACCTTGGCACGTGTTATGCAGAGAAAGGAACTTTTGTTGAACAATCATATATCTTCGTATGATCCATCGAATATTCAGGGGATGCCGACCTCTTTCGAGAATGTAGGTTGGTTGCAAGATGGTAATCAGAACCATCCTCATATTTTTGATTCATCTGCTCCTATGGATCCTCTCAGGGGCGACTTCAAATGTTGA 711 0.3882 MGRVKLEIKRIENTTNRQVTYSKRRNGLIKKAYELSILCDIDIALIMFSPSNRLSHFSGKRRIEDVLTRYINLPDQERDNAVSFPELPYRRGIQNKEYLLRILQQLRSENDIALHMSNSGDINSEIEELQQEVSRLQQQLQMAEEQIRIYEPNPLKMTSMAELETGEKNVVETLARVMQRKELLLNNHISSYDPSNIQGMPTSFENVGWLQDGNQNHPHIFDSSAPMDPLRGDFKC* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2550 236 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Mal8g2550 236 Coils Coil 119 146 - -
Mal8g2550 236 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Mal8g2550 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mal8g2550 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Mal8g2550 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal8g2550 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mal8g2550 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal8g2550 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal8g2550 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal8g2550 236 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 231 - -
Mal8g2550 236 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Mal8g2550 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2550 Mal-Chr8 58806902 58815431 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2550 1 231 Type I MADS-box Gene Family AT1G22130 64.255 1.73e-102 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal8g2550 SRF-TF 6.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2550 - - gmx:100305913 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g2550 8 58806902 58815431 Mal8g2550 8 58806902 58815431 ECH